AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 21, 2004 12:39PM
I would like to reduce a 3D+timeseries brik to include only Z images involved in specific event-related contrasts (e.g. base and condition 1, omitting images throughout the brik which are involved in different conditions). Then, using afni, I could view the intensities for these conditions (e.g., base vs condition1), and view how well the reference function relates to the actual time series. I know that 3dzcut can be used to cut z slices ( although it seems to only want to keep contiguous images), and that imcat can be used to patch them together into a single brik. thus, using a shell, I could cut and cat the images I want into a file. But, I was wondering if there is a utility that would open an existing timeseries specification text file and only include in the output brik images labelled 0 and 1, for instance? Images labelled >33333 (per usual) would not be included... thanks, Margaret Bradley
Subject Author Posted

Retaining non-contiguous Z images

m bradley June 21, 2004 12:39PM

Re: Retaining non-contiguous Z images

Robert Cox June 21, 2004 12:59PM

Re: Retaining non-contiguous Z images

m bradley June 21, 2004 01:08PM

Re: Retaining non-contiguous Z images

Robert Cox June 21, 2004 02:47PM

Re: Retaining non-contiguous Z images

rick reynolds June 21, 2004 03:12PM

Re: Retaining non-contiguous Z images

m bradley June 22, 2004 06:11PM

Re: Retaining non-contiguous Z images

Robert Cox June 23, 2004 08:51AM

Re: Retaining non-contiguous Z images

m bradley June 23, 2004 11:03AM