AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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NL
November 30, 2004 05:17PM
Hello again

The coronal obliques that I have are structurals not functionals. I did use your script Teodora, considering the structural coronal obliques that I had as functionals. Put the scanner co-ordinates for these coronals in a text file and the anatbrick I used was the volume. The script gave me an output angle to which I had to rotate the volume and also co-ordinates needed to rotate the oblique BRIKS. The problem was that I got co-ordinates for the R and L as well as slightly different co-ordinates for P and A. S and I stayed the same. R and L should have stayed 0.0. and I should have gotten changed co-ordinates for A and P and S and I. Dont really know why that happened. But well when I used the volume as the underlay and looked at the rotated oblique as the overlay, they didnt quite match. I guess I probably have thrown in the wrong co-ordinates. Any help on this will really be appreciated.

Thanks
NL

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Subject Author Posted

reconstruction of oblique coronals

NL November 23, 2004 10:23AM

Re: reconstruction of oblique coronals

teodora November 23, 2004 01:42PM

Re: reconstruction of oblique coronals

NL November 23, 2004 03:26PM

Re: reconstruction of oblique coronals

Wolfgang November 25, 2004 11:48AM

Re: reconstruction of oblique coronals

NL November 30, 2004 05:17PM

Re: reconstruction of oblique coronals

Rich Hammett November 23, 2004 04:21PM