AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Bin
December 11, 2004 07:09PM
Dear Experts,

I am running an experiment for 5 runs with one condition (two subjects). I want to find the main common activity areas for the whole 5 runs and the different activity ares between any two runs. I write down the following scripts for my purposes, but I am a new user for statistical analysis of AFNI and I am not sure whether they are appropriate or not. Could you please give me an instruction on that? Thanks a lot.

3dANOVA2 -type 3 -alevels 5 -blevels 2 \

-dset 1 1 TT1+tlrc \
-dset 2 1 TT2+tlrc \
-dset 3 1 TT3+tlrc \
-dset 4 1 TT4+tlrc \
-dset 5 1 TT5+tlrc \
-dset 1 2 RR1+tlrc \
-dset 2 2 RR2+tlrc \
-dset 3 2 RR3+tlrc \
-dset 4 2 RR4+tlrc \
-dset 5 2 RR5+tlrc \
-acontr 1 1 1 1 1 AllRun \
-acontr 1 -1 0 0 0 Run1vsRun2 \
-acontr 1 0 -1 0 0 Run1vsRun3 \
:
:
-acontr 0 0 0 1 -1 Run4vsRun5 \
-fa RunEffect \
-bucket ANOVA_Output

As I understand the output of option '-fa' is the main significant common activity areas for the whole 5 runs. Is that correct? And what does the output of "-acontr 1 1 1 1 1 AllRun" mean? In addition, could you please let me know how to read and find the corresponding content to each Sub-brick in the final output bucket dataset ? Thanks you very much for your kind instruction.

Best,
Bin

Subject Author Posted

How to find main effect with 3dANOVA2

Bin December 11, 2004 07:09PM

Re: How to find main effect with 3dANOVA2

Gang Chen December 12, 2004 07:00AM

Re: How to find main effect with 3dANOVA2

Bin December 13, 2004 07:39PM

Re: How to find main effect with 3dANOVA2

Gang Chen December 14, 2004 11:17AM