AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 14, 2004 10:54AM
> can we use the –stim_times and –iresp to output IRF for irregular
> timing stimuli?

Yes, I believe this is the very reason Bob implemented the option of -stim_times.

> I am confused about this, because using -stim_times option for
> 3dDeconvolve, you have to chose one of eight rtype, however, if
> you use –iresp option to output IRF, the 3dDeconvolve supposedly
> will do deconvolution instead of multiple regression, which means
> you do NOT need to input response model.

The modeling with irregular stimulus timing is done through multiple basis functions such as those lised for option -rtype. A coefficient (beta weight) is obtained through regression analysis for each basis function of each stimulus. However each coefficient only corresponds to one basis function for a stimulus. The user usually is not interested in those individual basis function coeficients, but wants to know the whole response function. You are correct that -iresp usually is used to obtain impulse response functions for deconvolution analysis, but if -iresp option is bundled with -stim_times, the new version of 3dDeconvolve reassembles a hemodynamic response function (or impulse response function in the case of event-related designs) for each stimulus (linear combination of those basis functions).

Gang
Subject Author Posted

3dDeconvolve -stim_times and -iresp

Jony December 13, 2004 10:29AM

Re: 3dDeconvolve -stim_times and -iresp

Gang Chen December 14, 2004 10:54AM

Re: 3dDeconvolve -stim_times and -iresp

Brian December 14, 2004 03:06PM

Re: 3dDeconvolve -stim_times and -iresp

Gang Chen December 14, 2004 03:59PM