AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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N
December 14, 2004 03:05PM
Hello All,

I have a very basic question about to3d. I have a dataset which on running 3dinfo gives me

Dataset File: Volume+orig
Identifier Code: XYZ_3I-mbbZWSeW65pvhlBmL8Q Creation Date: Wed Nov 24 11:56:38 2004
Dataset Type: Spoiled GRASS (-spgr)
Byte Order: LSB_FIRST [this CPU native = LSB_FIRST]
Storage Mode: BRIK file
Data Axes Orientation:
first (x) = Anterior-to-Posterior
second (y) = Superior-to-Inferior
third (z) = Left-to-Right [-orient ASL]
R-to-L extent: -90.200 [R] -to- 88.300 [L] -step- 1.500 mm [120 voxels]
A-to-P extent: -119.531 [A] -to- 119.531 [P] -step- 0.938 mm [256 voxels]
I-to-S extent: -119.531 -to- 119.531 [S] -step- 0.938 mm [256 voxels]
Number of values stored at each pixel = 1
-- At sub-brick #0 '#0' datum type is short: 0 to 1360

HISTORY
to3d -spgr -prefix Volume -session Results -2swap -view orig -xFOV 120.0A-120.0P -yFOV 120.0S-120.0I -zSLAB 88.3L-90.2R '3D:0:8432:256:256:1:Volume/I*'



Could someone please tell me what does A-P extent mean: Does it mean the distance between the centers of the voxels in the A-P direction?

The reason this is confusing me is because the FOV is 240. and so as I had entered 120 into A and P in my command line, I am still getting 119.531A-119.531P which adds upto 239.062 and not 240.

239.062/0.938 gives me 255 and hence I thought that the A-P extent is probably the distance between the centers.


Please do help. thanks

N

Subject Author Posted

to3d

N December 14, 2004 03:05PM

Re: to3d

rick reynolds December 14, 2004 03:37PM

Re: to3d

N December 14, 2004 04:14PM