AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 10, 2005 09:45AM
Yes, that reference agrees with other descriptions that I've read.
There are 3 positive axis (L,A,S) and all indexing moves in
the positive direction. The orient values 0,1 and 2 specify the indexing order.

As I understand it, the orient values 3-6 were only meant to be used
for animation so I've always ignored them
(see [www.mayo.edu] and [eeg.sourceforge.net]).

The latter reference states:
"The flipped orientations (orient values 3-5) are only defined in Analyze to support a movie animation. The flipping is not done in the slice direction, but rather in the dimension that suits raster graphics. The flipping has NO relationship to the actual orientation of the volume, only to how the data is handled during graphics processes. Thus, orient values 3-5 are NOT recommended. "

John
Subject Author Posted

analyze's orient field

John Ostuni March 10, 2005 08:26AM

Re: analyze's orient field

Robert Cox March 10, 2005 09:21AM

Re: analyze's orient field

John Ostuni March 10, 2005 09:45AM