AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Rich Hammett
May 23, 2005 02:55PM
Catherine:

You shouldn't get this error. The only problem you might see going
from SPM to AFNI at this stage should be possibly the brain
oriented wrong.

I don't know whether any of your preprocessing steps might have
made the brain image look less brainlike.

to3d should work for time series data. It should also work if you've
already got statistical volumes, but 3dcopy might be easier for these.

I'd be glad to look at your data if you'd like to upload a volume. I'd
definitely need to see the SPM volume you're trying to import, then
maybe your original SPM volume (pre-pre-processing) and your
AFNI volume you generated that doesn't look brainlike. If you
don't upload an AFNI volume, what to3d command did you use?

rich
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Subject Author Posted

SPM - AFNI

Catherine Fassbender May 23, 2005 02:11PM

Re: SPM - AFNI

Rich Hammett May 23, 2005 02:55PM

Re: SPM - AFNI

Catherine Fassbender May 23, 2005 03:36PM

Re: SPM - AFNI

Rich Hammett May 23, 2005 04:16PM

Re: SPM - AFNI

Catherine Fassbender May 23, 2005 04:30PM

Re: SPM - AFNI

Catherine Fassbender May 23, 2005 04:37PM

Re: SPM - AFNI

Rich Hammett May 23, 2005 05:25PM

Re: SPM - AFNI

Catherine Fassbender May 23, 2005 05:39PM