AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 14, 2005 05:34PM
Hi again,
There is one thing that I still find unclear in this expression:

<No, it seems that -expr 'step (a-a_threshold) - step (b-b_threshold)' would <give you the following:

<if the value at a voxel is 1, activation in group 1 but no activation in group 2;
<if the value is -1, activation in group 2 but no activation in group 1;
<if the value is 0, both groups are either active or inactive at the same time.

Since the step function will replace any value <0 with a 0, this means that for example a t-value of +4 and a t-value of -4 (actually minus any number) will both be transformed into 0 if the threshold is for example 4.3. The consequence of this is that a deactivation of any size and a small activation below the threshold will be considered to be the same thing although they are very different. So the difficulty, then, would be to distinguish between a lack of activation and a deactivation, unless I've misunderstood something.

Thanks,
Hedvig.

Subject Author Posted

Conjunction/Difference analysis

Hedvig September 13, 2005 03:45PM

Re: Conjunction/Difference analysis

Gang Chen September 13, 2005 05:14PM

Re: Conjunction/Difference analysis

Hedvig September 13, 2005 05:58PM

Re: Conjunction/Difference analysis

Gang Chen September 14, 2005 01:16PM

Re: Conjunction/Difference analysis

Hedvig September 14, 2005 04:24PM

Re: Conjunction/Difference analysis

Hedvig September 14, 2005 05:34PM

Re: Conjunction/Difference analysis

Gang Chen September 14, 2005 05:58PM

Re: Conjunction/Difference analysis

Hedvig September 15, 2005 11:09AM

Re: Conjunction/Difference analysis

nadine October 31, 2005 03:32PM

Re: Conjunction/Difference analysis

Gang Chen October 31, 2005 03:44PM

Re: Conjunction/Difference analysis

nadine October 31, 2005 04:58PM

Re: Conjunction/Difference analysis

Gang Chen October 31, 2005 05:23PM