AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 18, 2005 11:07AM
Hi Kyle,

It seems to me that the 1st seven rows of your original glt matrix would be good enough to catch what you want: the voxels where a difference exists between at least two conditions. That is,

A B C D E F G H
_______________
1 -1 0 0 0 0 0 0
1 0 -1 0 0 0 0 0
1 0 0 -1 0 0 0 0
1 0 0 0 -1 0 0 0
1 0 0 0 0 -1 0 0
1 0 0 0 0 0 -1 0
1 0 0 0 0 0 0 -1

The reason is this. Any other pair-wise constrast is essentially represented by two of the contrasts in the above matrix. For example, the contrast in row number 8 is basically expressed by the first two rows. If we denote the corresponding null hypothesis for contrast B-C as

H_01: B = C

and the null hypothesis for the first two rows as

H_02: A = B, and A = C

If you reject H_01 (B is very different from C), either A is very different from C, or B is significantly different from C (it can't be neither), so you would reject H_02. So H_01 is already included in H_02, and you won't miss anything.

Needless to say, such a glt matrix is not unique, and you can come up with several other matrices with seven rows. The pivotal point here is that those rows have to be independent with each other.

Gang
Subject Author Posted

contrast coding

Kyle October 18, 2005 10:18AM

Re: contrast coding

Gang Chen October 18, 2005 11:07AM

Re: contrast coding

Kyle October 18, 2005 11:32AM

Re: contrast coding

Chris Moore December 05, 2005 12:36PM

Re: contrast coding

Gang Chen December 05, 2005 03:27PM

Re: contrast coding

Chris Moore December 07, 2005 04:59PM

Re: contrast coding

Gang Chen December 08, 2005 02:09PM