AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 07, 2005 04:59PM
Hi Gang,

Thanks for the response. It was quite helpful. To make absolutely sure that we are doing things right, I have two follow-up questions. The first is a clarification.

1) For the GLT matrix suggestion by Kyle (first seven rows), extracting t statistics for each row (each contrast), thresholding the SPM and then taking the union would answer the question, "For this voxel, does Condition 1 differ from any other single condition?" I think this is what you are suggesting above, as a conjunction analysis.

Whereas testing the F statistic for that GLT would answer the question, "For this voxel, does any condition differ from any other condition?" As such, the F stat will for the first-7 rows of kyles GLT can be significant if even A does not significantly differ from anything

2) When calculating the F statistic for the GLT, do the regressors have to be orthogonal? If we wanted to ask, "For this voxel, does any condition differ from any other condition?" would it be best to use the following GLT matrix?:

1 1 1 1 0 0 0 0
1 1 -1 -1 0 0 0 0
1 -1 0 0 0 0 0 0
0 0 1 -1 0 0 0 0
0 0 0 0 1 1 -1 -1
0 0 0 0 1 -1 0 0
0 0 0 0 0 0 1 -1

instead of the first 7 lines of Kyle's GLT matrix?

Thanks for your input,
-Chris
Subject Author Posted

contrast coding

Kyle October 18, 2005 10:18AM

Re: contrast coding

Gang Chen October 18, 2005 11:07AM

Re: contrast coding

Kyle October 18, 2005 11:32AM

Re: contrast coding

Chris Moore December 05, 2005 12:36PM

Re: contrast coding

Gang Chen December 05, 2005 03:27PM

Re: contrast coding

Chris Moore December 07, 2005 04:59PM

Re: contrast coding

Gang Chen December 08, 2005 02:09PM