AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 27, 2005 04:39PM
Hello!

Thanks for all the help. I added -DDONT_USE_MCW_MALLOC to the mpicc make line in the make file. I also added #define DONT_USE_MCW_MALLOC in the mcw_malloc.h header, however we are still getting the malloc hook test error. I tried using both 'make cleanest' and 'rm *.o *.a' before making with no luck.

Is there anywhere else where malloc may get overwritten? We're still waiting on the admins to see if they can compile a version of mpi which doesn't care if malloc is redifined. (as an optimization, mpirun overwrites malloc so that it can do less copies when passing massages across nodes, so if the app overwrites it, it wont work. A recompiled version of mpi which doesn't have this optimization will take a slight performance hit).

We are able to run multiple mpi processes on one node. If this problem doesn't get resolved, we'll still be able to implement our changes, however we wont be able to provide any true performance results...

Thanks again!

-Omid
Subject Author Posted

overloading malloc

Omid November 23, 2005 09:44PM

Re: overloading malloc

rick reynolds November 23, 2005 11:01PM

Re: overloading malloc

bob cox November 24, 2005 11:17AM

Re: overloading malloc

ziad Saad November 24, 2005 11:53AM

Re: overloading malloc

rick reynolds November 24, 2005 01:49PM

Re: overloading malloc

Godot November 24, 2005 09:11PM

Re: overloading malloc

Omid November 27, 2005 04:39PM

Re: overloading malloc

bob cox November 28, 2005 01:18PM

Re: overloading malloc

Omid November 29, 2005 04:48PM

Re: overloading malloc

bob cox November 29, 2005 05:00PM