Thanks,
I plan on using sagittal acquisition on my next experiment.
Currenly with the axial data, during preprocessing, for each run, I use:
to3d to make the 3d+time dataset
then
3dTshift to time-shift slice data as though they were collected simultanously at each volume
then
3dTcat to concatenate all three runs
then
3dVolreg to do the motion correction.
Would I do anything different in this general scheme when using the 2d program? Would/could I use it on the slice-wise data before 3dTshift, for example?
Thanks for any advice.
Jim B