AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Ziad Saad
March 07, 2006 09:43PM
Hi Anthony,

So why is it that you need a template surface for? There may be different
solutions for what you need to do. To create an average surface model for
all these volumes, you could follow Veronica's recipe. In particular:
1- Align the volumes to a common reference volume. That reference
volume could be one of the children's volume. Preferably an AC-PC aligned
version of one volume. (3dWarpDrive, FLIRT, whatever rocks your boat...)
2- Average all aligned brains to create an average volume. If you have
one of those already you could skip the first part. (3dMean)
3- Repeat alignment of each child's original volume with the average
volume which is now your template. You could repeat 1-3 until the average
volume stops changing.
4- Create surface models with SureFit, FreeSurfer, etc.
4.5- Warp surfaces to a template (FreeSurfer) or based on Sulcal
Landmarks (Caret).
5- Create standard mesh versions of all the single subject surfaces.
(MapIcosahedron, see section 'K. Surface-Based Cross-Subject Analysis:' at

[afni.nimh.nih.gov])
6- Average all standard-mesh surfaces to create an average surface
template.

As you can see it is not that easy to create a surface template and there
might be more appropriate means for generating it then what we are
suggesting here. It all depends on what you want to do with the template.

cheers,
-ziad
Subject Author Posted

child surface template

Anthony Dick March 02, 2006 11:43AM

Re: child surface template

Daniel Glen March 02, 2006 01:11PM

Linking

Zhark March 02, 2006 01:37PM

Re: Linking

rick reynolds March 02, 2006 01:54PM

Re: Linking

Vince March 02, 2006 05:35PM

Re: child surface template

Anthony Dick March 02, 2006 05:35PM

Re: child surface template

Veronica S Smith March 02, 2006 06:00PM

Re: child surface template

Donna Dierker March 07, 2006 09:41PM

Re: child surface template

Ziad Saad March 07, 2006 09:43PM

Re: child surface template

Anthony Dick March 13, 2006 01:57PM

Re: Linking

Daniel Glen March 02, 2006 02:41PM