AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 10, 2006 03:38PM


Hi Gang,

I won't worry about the spurious correlations at the edges of the brain.
But, I ran 3dttest for one of the first order t-tests in my experiment
(SvNS: switch vs. no-switch) and compared the map to the t map from
running GroupAna. And, now I am really puzzled. The t values and probablilities are not that close. If I threshold the maps at p=.005,
in the t map from 3dttest, I have lots of significant clusters. In the
t map from GroupAna, I have very few. I'm not sure what could account
for this difference, unless the way I have set up the analysis is not
equivalent.

What got me to this point was that I was trying to define ROIs from
my random effects ANOVA and t-tests (run with GroupAna), but found
that I had very few clusters surviving at p<.005 or p<.001, even for
regions that are known to be associated with the contrast of interest.

--Stacia
Subject Author Posted

2nd order contrast for the matlab GroupAna.m script

Ricky Tong March 10, 2006 10:06AM

Re: 2nd order contrast for the matlab GroupAna.m script

rick reynolds March 10, 2006 12:16PM

Re: 2nd order contrast for the matlab GroupAna.m script

Stacia Friedman-Hill March 10, 2006 12:44PM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 10, 2006 01:40PM

Re: 2nd order contrast for the matlab GroupAna.m script

Stacia Friedman-Hill March 10, 2006 03:38PM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 10, 2006 04:20PM

Re: 2nd order contrast for the matlab GroupAna.m script

Stacia Friedman-Hill March 13, 2006 10:16AM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 13, 2006 10:55AM

Re: 2nd order contrast for the matlab GroupAna.m script

Stacia Friedman-Hill March 13, 2006 11:35AM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 13, 2006 04:33PM

Found the problem - Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 13, 2006 05:44PM

Re: Found the problem - Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 13, 2006 09:39PM

Re: Found the problem - Re: 2nd order contrast for the matlab GroupAna.m script

Stacia Friedman-Hill March 14, 2006 01:53PM

Re: Found the problem - Re: 2nd order contrast for the matlab GroupAna.m script

Stacia Friedman-Hill March 14, 2006 04:04PM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 10, 2006 01:37PM

Re: 2nd order contrast for the matlab GroupAna.m script

Ricky Tong March 13, 2006 09:56AM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 13, 2006 11:02AM

Re: 2nd order contrast for the matlab GroupAna.m script

Ricky Tong March 13, 2006 11:20AM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 13, 2006 04:35PM

Re: 2nd order contrast for the matlab GroupAna.m script

Ricky Tong March 14, 2006 10:18AM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 16, 2006 02:18PM

Re: 2nd order contrast for the matlab GroupAna.m script

ye March 16, 2006 10:57AM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 16, 2006 02:26PM

Re: 2nd order contrast for the matlab GroupAna.m script

ye March 16, 2006 03:16PM

Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 16, 2006 05:50PM

Better solution - Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 17, 2006 03:05PM

Re: Better solution - Re: 2nd order contrast for the matlab GroupAna.m script

Ricky Tong March 20, 2006 04:40PM

Re: Better solution - Re: 2nd order contrast for the matlab GroupAna.m script

Gang Chen March 20, 2006 05:10PM