AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
March 14, 2006 04:47PM
As far as the issues of getting the data into AFNI correctly, there are several environmental variables that AFNI can use in combination with Analyze files. They are mentioned here:

[afni.nimh.nih.gov]
[afni.nimh.nih.gov]

Try

setenv AFNI_ANALYZE_AUTOCENTER YES

The warning messages can probably avoided by

setenv AFNI_ANALYZE_ORIGINATOR NO

You can also copy the Analyze files to AFNI format with the 3dcopy command.

You might want to convert at the Bruker to DICOM format instead with their Export manager in the Paravision software.

There is also our 3T_toafni program, but I don't know if that will work with your particular Bruker scanner and Paravision software.
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Subject Author Posted

ANALYZE to AfNI

Abhishek March 14, 2006 03:11PM

Re: ANALYZE to AfNI

Vince March 14, 2006 04:29PM

Re: ANALYZE to AfNI

Daniel Glen March 14, 2006 04:47PM

Re: ANALYZE to AfNI

Rich Hammett March 14, 2006 08:48PM