AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
Ziad Saad
May 17, 2006 05:03PM
Hi again,

Before I proceed, the prelude:
You will need to download the latest version of AFNI. The code is still compiling, look for versions that post-date this posting.

1- I wrote a new script called @SUMA_Make_Spec_Caret which works fine on the data directory structure you sent me. I am hoping that its contents are pretty typical, though I am not sure what to make of the .LR. surfaces. At any rate the script will generate spec files for .L .R and .LR surfaces and suggest a command for you to execute at the end to look at your data. The script will automatically run caret_file_convert if necessary.
2- I had to modify suma to work well with the new surfaces.

Sample commands on your data would be:
@SUMA_Make_Spec_Caret -sid Humain
(answer 3 prompts with: 1, 1, 1)
afni -niml &
suma -spec Humain_lrh.spec -sv axialized3ddupped+tlrc.HEAD

I hope this works for you. Let me know either way.

cheers,
-ziad
Subject Author Posted

Making SUMA Spec File for Caret Volume

Cody May 08, 2006 01:00PM

Re: Making SUMA Spec File for Caret Volume

Ziad Saad May 08, 2006 02:02PM

Re: Making SUMA Spec File for Caret Volume

Cody May 08, 2006 02:21PM

Re: Making SUMA Spec File for Caret Volume

Ziad Saad May 08, 2006 03:26PM

Re: Making SUMA Spec File for Caret Volume

Cody May 10, 2006 02:58PM

Re: Making SUMA Spec File for Caret Volume

Ziad Saad May 10, 2006 04:17PM

Re: Making SUMA Spec File for Caret Volume

Donna Dierker May 11, 2006 09:16AM

Re: Making SUMA Spec File for Caret Volume

Cody May 11, 2006 10:00AM

Re: Making SUMA Spec File for Caret Volume

Cody May 17, 2006 07:52AM

Re: Making SUMA Spec File for Caret Volume

Ziad Saad May 17, 2006 09:57AM

Re: Making SUMA Spec File for Caret Volume

Ziad Saad May 17, 2006 05:03PM

Re: Making SUMA Spec File for Caret Volume

Cody May 18, 2006 07:55AM