Hi,
I as looking over the cortical surface handouts that Ziad and Peggy provided and had a quick question.
I only have one high resolution anatomical volume. In terms of the BRIK that is to specified for use when using 'mri_convert' should it be AC-PC aligned?...or should I just input the BRIK file of the volume as is (e.g. no alignment using 3drotate; straight off the scanner)?
Also if AC-PC alignment is needed am I correct in assuming that I will need to use adwarp to create the acpc.BRIK?
Thanks.
Vinny
