AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Colm Connolly
June 01, 2006 11:10AM
Hi everybody,

Any idea what causes 3dDeconvolve to spit out errors like this?

3dDeconvolve -jobs 2 -input ctrl/em0002/em0002.vsrr.nii -polort 1 -rmsmin 1.0 -fdisp 1000 -censor /home/thpsy/colmconn/mriAnalyses/vsrr/censor//censorVSRR.1D -concat /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//concat.1D -num_stimts 12 -stim_file 1 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[0\] -stim_label 1 reward -stim_minlag 1 0 -stim_maxlag 1 7 -iresp 1 ctrl/em0002/em0002.irf.reward.nii -stim_file 2 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[1\] -stim_label 2 punish -stim_minlag 2 0 -stim_maxlag 2 7 -iresp 2 ctrl/em0002/em0002.irf.punish.nii -stim_file 3 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[2\] -stim_label 3 reject -stim_minlag 3 0 -stim_maxlag 3 7 -iresp 3 ctrl/em0002/em0002.irf.reject.nii -stim_file 4 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[3\] -stim_label 4 error -stim_minlag 4 0 -stim_maxlag 4 7 -iresp 4 ctrl/em0002/em0002.irf.error.nii -stim_file 5 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[4\] -stim_label 5 miss -stim_minlag 5 0 -stim_maxlag 5 7 -iresp 5 ctrl/em0002/em0002.irf.miss.nii -stim_file 6 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdouble.1D -stim_label 6 double -stim_minlag 6 0 -stim_maxlag 6 7 -iresp 6 ctrl/em0002/em0002.irf.double.nii -stim_file 7 ctrl/em0002/em0002.vsrr.allMotion.1D\[0\] -stim_file 8 ctrl/em0002/em0002.vsrr.allMotion.1D\[1\] -stim_file 9 ctrl/em0002/em0002.vsrr.allMotion.1D\[2\] -stim_file 10 ctrl/em0002/em0002.vsrr.allMotion.1D\[3\] -stim_file 11 ctrl/em0002/em0002.vsrr.allMotion.1D\[4\] -stim_file 12 ctrl/em0002/em0002.vsrr.allMotion.1D\[5\] -fout -rout -bucket ctrl/em0002/em0002.vsrr.dec.nii -fitts ctrl/em0002/em0002.vsrr.dec-fitts.nii

++ Program 3dDeconvolve: AFNI version=AFNI_2006_03_21_1314 [64-bit]
++ Authored by: B. Douglas Ward, et al.
++ total shared memory needed = 773324800 bytes
++ mmap() memory allocated: 773324800 bytes
++ (786x66) Matrix condition [X]: 18.8537
++ Matrix inverse average error = 5.72914e-16
++ Matrix setup time = 1.24 s
++ Voxels in dataset: 204800
++ Voxels per job: 102400
++ Job #1: processing voxels 102400 to 204799; elapsed time=8.283
++ Job #0: processing voxels 0 to 102399; elapsed time=8.295
++ Job #0 waiting for children to finish; elapsed time=481.859
++ Job #1 finished; elapsed time=627.996
++ Job #0 now finishing up; elapsed time=628.100
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.reward.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.punish.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.reject.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.error.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.miss.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.double.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.vsrr.dec-fitts.nii
++ Program finished; elapsed time=635.046
++ Wrote bucket dataset into ctrl/em0002/em0002.vsrr.dec.nii

The first tiem i got this i tranformed ctrl/em0002/em0002.vsrr.nii to float using 3dmerge -doall -datum float. Then I noticed that I'd run out of disk space and after clearing up some I still get this error.

Thank in advance,

Regards,

Colm.

Subject Author Posted

nifti errors

Colm Connolly June 01, 2006 11:10AM

Re: nifti errors

Daniel Glen June 01, 2006 11:47AM

Re: nifti errors

rick reynolds June 01, 2006 11:52AM

Re: nifti errors

Colm Connolly June 01, 2006 02:07PM

Re: nifti errors

rick reynolds June 01, 2006 03:14PM

Re: nifti errors

mark March 04, 2008 03:10PM

Re: nifti errors

bob cox March 04, 2008 03:19PM