History of AFNI updates  

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Colm Connolly
June 01, 2006 11:10AM
Hi everybody,

Any idea what causes 3dDeconvolve to spit out errors like this?

3dDeconvolve -jobs 2 -input ctrl/em0002/em0002.vsrr.nii -polort 1 -rmsmin 1.0 -fdisp 1000 -censor /home/thpsy/colmconn/mriAnalyses/vsrr/censor//censorVSRR.1D -concat /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//concat.1D -num_stimts 12 -stim_file 1 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[0\] -stim_label 1 reward -stim_minlag 1 0 -stim_maxlag 1 7 -iresp 1 ctrl/em0002/em0002.irf.reward.nii -stim_file 2 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[1\] -stim_label 2 punish -stim_minlag 2 0 -stim_maxlag 2 7 -iresp 2 ctrl/em0002/em0002.irf.punish.nii -stim_file 3 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[2\] -stim_label 3 reject -stim_minlag 3 0 -stim_maxlag 3 7 -iresp 3 ctrl/em0002/em0002.irf.reject.nii -stim_file 4 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[3\] -stim_label 4 error -stim_minlag 4 0 -stim_maxlag 4 7 -iresp 4 ctrl/em0002/em0002.irf.error.nii -stim_file 5 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdiff.1D\[4\] -stim_label 5 miss -stim_minlag 5 0 -stim_maxlag 5 7 -iresp 5 ctrl/em0002/em0002.irf.miss.nii -stim_file 6 /home/thpsy/colmconn/mriAnalyses/vsrr/canonicals//em0002.VSRRdouble.1D -stim_label 6 double -stim_minlag 6 0 -stim_maxlag 6 7 -iresp 6 ctrl/em0002/em0002.irf.double.nii -stim_file 7 ctrl/em0002/em0002.vsrr.allMotion.1D\[0\] -stim_file 8 ctrl/em0002/em0002.vsrr.allMotion.1D\[1\] -stim_file 9 ctrl/em0002/em0002.vsrr.allMotion.1D\[2\] -stim_file 10 ctrl/em0002/em0002.vsrr.allMotion.1D\[3\] -stim_file 11 ctrl/em0002/em0002.vsrr.allMotion.1D\[4\] -stim_file 12 ctrl/em0002/em0002.vsrr.allMotion.1D\[5\] -fout -rout -bucket ctrl/em0002/em0002.vsrr.dec.nii -fitts ctrl/em0002/em0002.vsrr.dec-fitts.nii

++ Program 3dDeconvolve: AFNI version=AFNI_2006_03_21_1314 [64-bit]
++ Authored by: B. Douglas Ward, et al.
++ total shared memory needed = 773324800 bytes
++ mmap() memory allocated: 773324800 bytes
++ (786x66) Matrix condition [X]: 18.8537
++ Matrix inverse average error = 5.72914e-16
++ Matrix setup time = 1.24 s
++ Voxels in dataset: 204800
++ Voxels per job: 102400
++ Job #1: processing voxels 102400 to 204799; elapsed time=8.283
++ Job #0: processing voxels 0 to 102399; elapsed time=8.295
++ Job #0 waiting for children to finish; elapsed time=481.859
++ Job #1 finished; elapsed time=627.996
++ Job #0 now finishing up; elapsed time=628.100
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.reward.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.punish.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.reject.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.error.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.miss.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.irf.double.nii
** ERROR: CANNOT WRITE NIfTI FILE; BRICK FACTORS NOT CONSISTENT
(consider transforming to a float dataset before performing
this operation, or consider '3dAFNItoNIFTI -float')
++ Wrote 3D+time dataset into ctrl/em0002/em0002.vsrr.dec-fitts.nii
++ Program finished; elapsed time=635.046
++ Wrote bucket dataset into ctrl/em0002/em0002.vsrr.dec.nii

The first tiem i got this i tranformed ctrl/em0002/em0002.vsrr.nii to float using 3dmerge -doall -datum float. Then I noticed that I'd run out of disk space and after clearing up some I still get this error.

Thank in advance,

Regards,

Colm.

Subject Author Posted

nifti errors

Colm Connolly June 01, 2006 11:10AM

Re: nifti errors

Daniel Glen June 01, 2006 11:47AM

Re: nifti errors

rick reynolds June 01, 2006 11:52AM

Re: nifti errors

Colm Connolly June 01, 2006 02:07PM

Re: nifti errors

rick reynolds June 01, 2006 03:14PM

Re: nifti errors

mark March 04, 2008 03:10PM

Re: nifti errors

bob cox March 04, 2008 03:19PM