AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 19, 2006 01:03PM
Hi Jen,

How many TRs do you have per run, and now many runs are there?

Each run is probably long (since you use -polort 4), but still,
you have 22 stimulus regressors with 33 lags each, besides your
motion parameters. That is asking a lot from your data. With
4 times as many regressors as before (the jittering), you lose
a lot of statistical power.

Note that you should not need to use -stim_nptr on your motion
parameters. Those are going to exist on the TR grid, and should
not need to be broken up.

It seems to me that you would be better off applying the actual
stimulus times using -stim_times, as opposed to breaking up the
TRs with -stim_nptr. If you apply the stimulus times, then you
could use TENT(0,secs,9) functions for those options (where secs
would be the number of seconds in 8 TRs).

I am guessing that you would use min/max lags of 0/8 if you were
not using '-stim_nptr 4', so instead of 9 regressors on the TR
from lags, you can get those 9 regressors from the coefficients
of the TENT functions (again, on the TR). This should come out
to basically the same thing, except that your stimuli need not
be TR-locked.

- rick

Subject Author Posted

stim_nptr and weird results

Jen Roth June 18, 2006 07:20PM

Re: stim_nptr and weird results

rick reynolds June 19, 2006 01:03PM