Hi Erin,
This script is from HowTo #3, and needs to be run either
from the ht03_stim directory, or from the AFNI_data1/ht03
class directory. That is where the contrast files for the
script are (e.g. for the '-glt 1 contrasts/contrast_AB'
option to 3dDeconvolve).
If you run it without the -glt options, then you can run
it from anywhere. To do that, you need to change the 'awk'
command to match perhaps 'norm. std.', instead of 'LC'.
Also, you would have to remove references to $nums[5] and
$nums[6], since there are only 4 stimulus classes, and so
only 4 norm. std. dev. lines.
- rick