AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 19, 2007 03:59PM
Hi Erin,

This script is from HowTo #3, and needs to be run either
from the ht03_stim directory, or from the AFNI_data1/ht03
class directory. That is where the contrast files for the
script are (e.g. for the '-glt 1 contrasts/contrast_AB'
option to 3dDeconvolve).

If you run it without the -glt options, then you can run
it from anywhere. To do that, you need to change the 'awk'
command to match perhaps 'norm. std.', instead of 'LC'.
Also, you would have to remove references to $nums[5] and
$nums[6], since there are only 4 stimulus classes, and so
only 4 norm. std. dev. lines.

- rick

Subject Author Posted

RSFgen - issue with script

Erin Skinner January 19, 2007 01:51PM

Re: RSFgen - issue with script

Erin Skinner January 19, 2007 01:55PM

Re: RSFgen - issue with script

Erin Skinner January 19, 2007 03:40PM

Re: RSFgen - issue with script

rick reynolds January 19, 2007 03:59PM

Re: RSFgen - issue with script

Erin Skinner January 22, 2007 10:33AM

Re: RSFgen - issue with script

Tracy Jill April 12, 2007 01:42PM

Re: RSFgen - issue with script

Tracy Jill April 12, 2007 02:10PM

Re: RSFgen - issue with script

rick reynolds April 12, 2007 02:22PM

Re: RSFgen - issue with script

Zhaohui June 04, 2007 01:57PM

Re: RSFgen - issue with script

rick reynolds June 04, 2007 02:02PM

Re: RSFgen - issue with script

Zhaohui June 04, 2007 02:06PM

Re: RSFgen - issue with script

rick reynolds June 04, 2007 02:12PM

Re: RSFgen - issue with script

Zhaohui June 04, 2007 02:23PM

Re: RSFgen - issue with script

DA August 05, 2008 05:06PM

Re: RSFgen - issue with script

rick reynolds August 05, 2008 10:57PM