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AFNI
September 17, 2007 08:47AM
Ciao Cristina,

If the spikes are throwing the registration off, then you should certainly run 3ddespike first. Note that 3dAllineate may give you less than optimal results for registering EPI to EPI in this case. Consider using 3dWarpDrive or 3dvolreg for that purpose or at least download the latest version of 3dAllineate which is still being polished.

cheers,
z
Subject Author Posted

sporadic movement: censor or replace?

cristina September 14, 2007 10:09AM

Re: sporadic movement: censor or replace?

Ziad September 14, 2007 03:47PM

Re: sporadic movement: censor or replace?

cristina September 17, 2007 05:54AM

Re: sporadic movement: censor or replace?

AFNI September 17, 2007 08:47AM