AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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nameeta
October 22, 2007 11:17AM
Hi Daniel,

I typed in a similar command line I sent you before for this data. I have 17 slices, 5 mm thick and I just typed
to3d -xFOV 120.0R-120.0L -yFOV 120.0A-120.0P -zFOV 42.5I-42.5S -prefix ts.3 -epan -time:zt 17 375 1000 alt+z '3D:0:0:64:64:1:func3/I*'

I got a tilted time series that looked oblique. I also have an oblique inplane (recontructed in the same fashion) and a structural, acquired axially. I rotated the structural to match the inplane. The final deconvolved dataset looked exactly how it should look like with activity in the right areas.

I dont really know whether there was any oblique information stored in the reconstructed GE-I files, but maybe there was.

Any thoughts about this???

Thanks
Nameeta

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Subject Author Posted

to3d on oblique data

nameeta October 17, 2007 04:28PM

Re: to3d on oblique data

Daniel Glen October 18, 2007 01:29PM

Re: to3d on oblique data

nameeta October 22, 2007 11:17AM

Re: to3d on oblique data

Daniel Glen October 22, 2007 12:12PM