AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 04, 2008 05:46PM
I'm bringing this thread back from the dead because I have the exact same question as Kim, but I would like to request a clarification.

Background: I performed a group analysis on the beta weights output by 3dD -stim_times, and based on one of the contrasts from that group analysis I created an ROI mask (using 3dclust -1noneg... so that the mask would only include the ROIs from the positive condition in the contrast). Now, I want to get average timecourses over each of those ROIs, perhaps using the -iresp files output from 3dD, or whatever else is reasonable (as Rick suggested above).

However, I am a bit unclear on what exactly the -iresp files are. I thought that each iresp file contains the voxelwise impulse response (i.e., a beta weight based on the amplitude of the scaled data and the model function) from the time series for a given subject for each stimulus type at each lag in the model I specified in 3dD. However, in my model, I specified a six parameter tent function (TENT(0,15,6)), but the iresp files each contain seven sub-bricks. My TRs are 2.5s. So I'm led to believe that the iresp files contain one sub-brick for each TR in the 15s window I specified. Is that right?

If so, where do the specific values in each (voxel of each) sub-brick of the iresp files come from? Are they still voxelwise impulse responses (in the sense that I described above)? If so, why are there seven rather than six sub-bricks in each iresp file?
Subject Author Posted

extracting average timecourse of an ROI

kim October 26, 2007 11:48AM

Re: extracting average timecourse of an ROI

Gang Chen October 26, 2007 01:43PM

Re: extracting average timecourse of an ROI

Daniel Glen October 26, 2007 02:00PM

Re: extracting average timecourse of an ROI

kim October 30, 2007 11:54PM

Re: extracting average timecourse of an ROI

bob cox October 31, 2007 11:08AM

Re: extracting average timecourse of an ROI

kim November 01, 2007 01:06PM

Re: extracting average timecourse of an ROI

Daniel Glen November 01, 2007 03:05PM

Re: extracting average timecourse of an ROI

rick reynolds November 01, 2007 03:09PM

Re: extracting average timecourse of an ROI

kim November 07, 2007 02:57PM

Re: extracting average timecourse of an ROI

rick reynolds November 07, 2007 03:20PM

Re: extracting average timecourse of an ROI

kim November 08, 2007 09:53PM

Re: extracting average timecourse of an ROI

rick reynolds November 11, 2007 12:08PM

Re: extracting average timecourse of an ROI

Joe Paxton March 04, 2008 05:46PM

Re: extracting average timecourse of an ROI

rick reynolds March 04, 2008 06:32PM

Re: extracting average timecourse of an ROI

Joe Paxton March 04, 2008 07:54PM

Re: extracting average timecourse of an ROI

rick reynolds March 04, 2008 09:49PM