AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 04, 2008 09:49PM
Hi Joe,

Each iresp curve shows the consistent response to that particular
stimulus (per voxel). I find those curves terribly useful, as they
show what is really in your data. Even if you publish data that
assumes GAM, it is good to analyze some of that data using TENTs,
just to verify that the responses really do look like GAM curves.

Usually, the main reason for using TENTs is that you don't want to
make any assumptions about the shape of the response curve (other
than the maximum response time), because it is expected that the
curves will vary across some brain regions. Contrast that with
using GAM as a basis function, where you assume it looks _exactly_
like that curve, and the only question to answer is "how big was
the response?".

In your case, I guess you expect the shape of the response curves
to vary (e.g. in terms of how soon the response occurs, or how long
it lasts). If so, it seems quite likely that you would want to
discuss how average response curves vary over ROIs. Running either
3dmaskave or the more general 3dROIstats on your iresp curves seems
quite appropriate.

If you would like to read more about "deconvolution using TENTs",
check out the class handout on it. It is under the full handout
directory (/pub/dist/edu/latest):

[afni.nimh.nih.gov]
[afni.nimh.nih.gov]

As usual, there is a .ppt file, along with .pdf and .html formats.

- rick

Subject Author Posted

extracting average timecourse of an ROI

kim October 26, 2007 11:48AM

Re: extracting average timecourse of an ROI

Gang Chen October 26, 2007 01:43PM

Re: extracting average timecourse of an ROI

Daniel Glen October 26, 2007 02:00PM

Re: extracting average timecourse of an ROI

kim October 30, 2007 11:54PM

Re: extracting average timecourse of an ROI

bob cox October 31, 2007 11:08AM

Re: extracting average timecourse of an ROI

kim November 01, 2007 01:06PM

Re: extracting average timecourse of an ROI

Daniel Glen November 01, 2007 03:05PM

Re: extracting average timecourse of an ROI

rick reynolds November 01, 2007 03:09PM

Re: extracting average timecourse of an ROI

kim November 07, 2007 02:57PM

Re: extracting average timecourse of an ROI

rick reynolds November 07, 2007 03:20PM

Re: extracting average timecourse of an ROI

kim November 08, 2007 09:53PM

Re: extracting average timecourse of an ROI

rick reynolds November 11, 2007 12:08PM

Re: extracting average timecourse of an ROI

Joe Paxton March 04, 2008 05:46PM

Re: extracting average timecourse of an ROI

rick reynolds March 04, 2008 06:32PM

Re: extracting average timecourse of an ROI

Joe Paxton March 04, 2008 07:54PM

Re: extracting average timecourse of an ROI

rick reynolds March 04, 2008 09:49PM