AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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F
January 08, 2008 02:43PM
Hello again,

I am getting an error message while running 3dDeconvolve using the stim base option [see error below]. I have also attached the script. I have never had this problem before using very similar scripts. The only difference is that I recently downloaded the latest version of Afni. What are the consequences of this warning? Does 3dDeconvolve still use this as stim base information?

Error message:
*+ WARNING: no -stim_label given for stim #10 ==> label = 'Stim#10'
*+ WARNING: no -stim_label given for stim #11 ==> label = 'Stim#11'
*+ WARNING: no -stim_label given for stim #12 ==> label = 'Stim#12'
*+ WARNING: no -stim_label given for stim #13 ==> label = 'Stim#13'
*+ WARNING: no -stim_label given for stim #14 ==> label = 'Stim#14'
*+ WARNING: no -stim_label given for stim #15 ==> label = 'Stim#15'



Script:
3dDeconvolve -input ${subj}_r1_psc+orig ${subj}_r2_psc+orig ${subj}_r3_psc+orig ${subj}_r4_psc+orig ${subj}_r5_psc+orig ${subj}_r6_psc+orig ${subj}_r7_psc+orig ${subj}_r8_psc+orig ${subj}_r9_psc+orig\
-censor ${subj}_censor.txt \
-nobout \
-bucket ${subj}_statsCRE_mot \
-cbucket ${subj}_coeff_fitts_mot \
-polort 2 \
-fitts ${subj}_fitts_mot\
-legendre \
-num_stimts 15 \
-stim_file 1 ${subj}_gam_hrf_mot.1D'[0]' -stim_label 1 CB \
-stim_file 2 ${subj}_gam_hrf_mot.1D'[1]' -stim_label 2 CY \
-stim_file 3 ${subj}_gam_hrf_mot.1D'[2]' -stim_label 3 CBU \
-stim_file 4 ${subj}_gam_hrf_mot.1D'[3]' -stim_label 4 RY \
-stim_file 5 ${subj}_gam_hrf_mot.1D'[4]' -stim_label 5 RB \
-stim_file 6 ${subj}_gam_hrf_mot.1D'[5]' -stim_label 6 RYU \
-stim_file 7 ${subj}_gam_hrf_mot.1D'[6]' -stim_label 7 EB \
-stim_file 8 ${subj}_gam_hrf_mot.1D'[7]' -stim_label 8 EY \
-stim_file 9 ${subj}_gam_hrf_mot.1D'[8]' -stim_label 9 I \
-stim_file 10 ${subj}_all_motion2.1D'[0]' -stim_base 10 \
-stim_file 11 ${subj}_all_motion2.1D'[1]' -stim_base 11 \
-stim_file 12 ${subj}_all_motion2.1D'[2]' -stim_base 12 \
-stim_file 13 ${subj}_all_motion2.1D'[3]' -stim_base 13 \
-stim_file 14 ${subj}_all_motion2.1D'[4]' -stim_base 14 \
-stim_file 15 ${subj}_all_motion2.1D'[5]' -stim_base 15 \
-tout \
Subject Author Posted

stim label error message for stim base

F January 08, 2008 02:43PM

Re: stim label error message for stim base

bob cox January 08, 2008 03:12PM