AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 18, 2008 06:34PM
Rick,
Thank you very much for your responses. One more question on AlphaSim , with regard to the choice of the gaussian filter. I am using a brain mask (vox dimensions 3x3x3) with the same vox dimensions as my resampled maps. The line command is:

AlphaSim -mask 3402.3spgr.mask1+tlrc -iter 10000 -rmm 3.1 -pthr .01 -fwhm 3 -out as.out

My understanding is that the fwhm should be at least the dimension of your vox (e.g., 3) or greater, and that the greater the number the greater the cluster size you will need to achieve the desired family-wise p vaue. What would you recommend given my parameters?
Is there a more precise guideline for picking the appropriate fwhm value? Thank you very much,
Alessandra
Subject Author Posted

AlphaSim

Alessandra Passarotti January 09, 2008 06:35PM

Re: AlphaSim

rick reynolds January 09, 2008 07:14PM

Re: AlphaSim

Alessandra Passarotti January 09, 2008 07:50PM

Re: AlphaSim

rick reynolds January 09, 2008 08:25PM

Re: AlphaSim

Alessandra Passarotti January 10, 2008 03:48PM

Re: AlphaSim

Alessandra January 18, 2008 06:34PM

Re: AlphaSim

rick reynolds January 18, 2008 07:27PM

Re: AlphaSim

Alessandra January 21, 2008 12:22PM

Re: AlphaSim

Joe Paxton January 21, 2008 07:55PM

Re: AlphaSim

ziad January 21, 2008 09:41PM