AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 24, 2008 10:24AM
Rick,

Good suggestion. I just tried the following 3dVol2Surf command with an -oob option (didn't use -oom option because I'm not using -cmask):

3dVol2Surf \
-spec CW_BVspec.spec \
-surf_A CW_anat_inhom_crop_SAG_TRF_TAL_LH_RECOSM.srf \
-sv CW_anat_bvalgnd+tlrc \
-grid_parent CW_RNPAallruns+orig'[0..221]' \
-map_func mask \
-outcols_NSDformat \
-oob_value 0.0 \
-out_niml CW_RNPAallruns_lh1.niml.dset

And, then I ran the following SurfSmooth command:

SurfSmooth \
-met HEAT_07 \
-spec CW_BVspec.spec \
-surf_A CW_anat_inhom_crop_SAG_TRF_TAL_LH_RECOSM.srf \
-input CW_RNPAallruns_lh1.niml.dset \
-blurmaster CW_RNPAallruns_lh1.niml.dset \
-detpoly_master 3 \
-output CW_RNPASallruns_lh1.niml.dset \
-target_fwhm 4 \
-cmask '-a CW_RNPAallruns_lh1.niml.dset -expr bool(a)' \
> r1_smooth_LH.1D

Unfortunately, this resulted in the following error (exactly the same as before):

** nodemax(+1) of 111634(+1) is larger than the forced_mask_length of 110648
-cmask datasets may be inappropriate for surface used
*** glibc detected *** free(): invalid pointer: 0x0097e800 ***
Abort (core dumped)

Any other suggestions? I'm at a loss here.

Thanks,
Adam

Subject Author Posted

SurfSmooth problem

Adam Greenberg January 17, 2008 02:40PM

Re: SurfSmooth problem

Adam Greenberg January 22, 2008 01:46PM

Re: SurfSmooth problem

ziad January 23, 2008 06:03PM

Re: SurfSmooth problem

Adam Greenberg January 23, 2008 06:25PM

Re: SurfSmooth problem

rick reynolds January 23, 2008 07:02PM

Re: SurfSmooth problem

Adam Greenberg January 24, 2008 10:24AM

Re: SurfSmooth problem

rick reynolds January 24, 2008 10:55AM

Re: SurfSmooth problem

Adam Greenberg January 24, 2008 11:14AM

Re: SurfSmooth problem

ziad January 24, 2008 02:44PM

Re: SurfSmooth problem

Adam Greenberg January 24, 2008 05:04PM

Re: SurfSmooth problem

ziad January 24, 2008 05:34PM

Re: SurfSmooth problem

rick reynolds January 24, 2008 05:40PM

Re: SurfSmooth problem

Adam Greenberg January 24, 2008 06:01PM

Re: SurfSmooth problem

rick reynolds January 24, 2008 12:09PM

Re: SurfSmooth problem

Adam Greenberg January 24, 2008 02:08PM