Hi all,
I've been collecting oblique EPI and DTI datasets and a sagittal anatomical dataset. I've read Daniel Glen's "Dealing with Obliquity in AFNI," and when I attempt to oblique my anatomical, it doesn't align with the EPI datasets. I have been using 3dAllineate to co-register my functional and anatomical datasets, which seems to do a very good job. Do I need to worry about obliquing/de-obliquing datasets when using 3dAllineate? What about when I warp into standard space (e.g., tlrc)? The error messages I've been getting with the new version of AFNI are causing me to be concerned.
Thanks for you help!
-Bonnie
