AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 08, 2008 04:06PM
Dear AFNI team,

I'm hung up here on a basic issue of using column selection from a 1D file.

e.g.

>> 3dDeconvolve -input \
${SUBJ}mem_pp1_align+orig \
-mask full_mask+orig \
-nfirst 0 -polort 3 \
-num_stimts 2 -basis_normall 1 \
-stim_times 1 'reffunc.1D[0]' 'GAM' -stim_label 1 P.T \
-stim_times 2 'reffunc.1D[1]' 'GAM' -stim_label 2 P.ED \
-fitts fit_ts -errts error_ts \
-xjpeg glm_matrix.jpg \
-tout -fout -bucket glm_out

generates:

>> ** FATAL ERROR: '-stim_times 1' can't read any data from file 'reffunc.1D[0]'

but then doing a 1dplot on this column from the 1D file works just fine.
>> 1dplot 'reffunc.1D[0]'
>> (plot comes up fine)

Why is 3dDeconvolve failing to select the column from the 1D file if 1dplot is able to do this?

Thanks,
Jarrod

Subject Author Posted

1D column selection FATAL ERROR

Jarrod Lewis-Peacock February 08, 2008 04:06PM

Re: 1D column selection FATAL ERROR

bob cox February 08, 2008 04:28PM

Re: 1D column selection FATAL ERROR

Jarrod Lewis-Peacock February 08, 2008 04:35PM

Re: 1D column selection FATAL ERROR

bob cox February 08, 2008 04:51PM

Re: 1D column selection FATAL ERROR

Jarrod Lewis-Peacock February 08, 2008 04:57PM

Re: 1D column selection FATAL ERROR

Gang Chen February 08, 2008 05:22PM