AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 21, 2008 08:42PM
Hi Joe,

If you run 3dWarp to transform a dataset (such as you did with
your anatomical), then afterwards it should be listed as plumb.

The definition of being oblique is that the dataset axes do
not match the cardinal axes, they are rotated to some degree.
The 3dWarp program applies the oblique transformation, and
stores the result on a cardinal axis grid (requiring a resampling
of the data - the penalty of acquiring oblique data (though we
generally don't care about doing this to the anatomy)).

Note that if you want to apply the oblique transformation to the
EPI data, as is more precise, it should be a worry to apply an
extra resample step. However, once Daniel distributes his new
program, we will be able to offer something that applies that
at the volume registration step, so there is little penalty.

- rick

Subject Author Posted

3dinfo Data Axes Tilt Strangeness

Joe Paxton March 21, 2008 06:01PM

Re: 3dinfo Data Axes Tilt Strangeness

rick reynolds March 21, 2008 08:42PM

Re: 3dinfo Data Axes Tilt Strangeness

Joe Paxton March 22, 2008 01:24PM

Re: 3dinfo Data Axes Tilt Strangeness

rick reynolds March 22, 2008 06:35PM