I spoke too soon... the compilation completes, but none of the suma stuff gets outputted... so no suma executable, etc.... here are three problem areas i spotted.... one is about glxdino, the other netpbm (i can install that from fink), and the last is about copying the suma stuff.
/bin/rm -f SUMA_glxdino
cc -O2 -ffast-math -DDARWIN -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -o SUMA_glxdino SUMA_glxdino.c -I/sw/include -I/usr/X11R6/include -I./ -I../ -I../niml/ -Igts/src -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -L/usr/lib -L/sw/lib -L/usr/X11R6/lib -L../ -L/usr/local/lib /sw/lib/libXm.a -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lmri -lz -lm -lmx -lglib-2.0 -bind_at_load -dylib_file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib: /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
ld: library not found for -lGLw
collect2: ld returned 1 exit status
make[1]: *** [SUMA_glxdino] Error 1
configure: WARNING: libnetpbm not found. Some programs will not be available.
/bin/rm -f SurfMesh
cc -O2 -ffast-math -DDARWIN -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -DSUMA_COMPILED \
-o SurfMesh SUMA_coarsen.c \
-I/sw/include -I/usr/X11R6/include -I./ -I../ -I../niml/ -Igts/src -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -L/usr/lib -L/sw/lib -L/usr/X11R6/lib -L../ -L/usr/local/lib \
../parser.o ../parser_int.o ../xutil.o ../LiteClue.o -lf2c \
libSUMAGTS.a libSUMA.a libglut.a libply.a -lglib -lmrix -lcoxplot -lmri -lf2c -l3DEdge \
/sw/lib/libXm.a -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lmri -lz -lm -lmx -lglib-2.0 -bind_at_load -dylib_file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib: /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib libgts.a
ld: library not found for -lGLw
collect2: ld returned 1 exit status
make[1]: *** [SurfMesh] Error 1
( if [ ! -d macosx_10.5_Intel ]; then /bin/mkdir -p macosx_10.5_Intel; echo WARNING: directory macosx_10.5_Intel has been created. ; fi ;\
/bin/cp -f SUMA/suma SUMA/MakeColorMap SUMA/ROI2dataset SUMA/3dVol2Surf \
SUMA/3dSurf2Vol SUMA/SurfMeasures \
SUMA/ScaleToMap SUMA/MapIcosahedron SUMA/CreateIcosahedron \
SUMA/CompareSurfaces \
SUMA/ConvertSurface SUMA/ConvertDset SUMA/SurfClust SUMA/IsoSurface \
SUMA/ConvexHull SUMA/SUMA_glxdino SUMA/SUMA_pixmap2eps SUMA/SurfaceMetrics \
SUMA/inspec SUMA/quickspec SUMA/FSread_annot SUMA/SurfPatch SUMA/SurfQual \
SUMA/SurfSmooth SUMA/SUMA_paperplane \
SUMA/SampBias SUMA/3dSkullStrip SUMA/3dCRUISEtoAFNI \
SUMA/3dBRAIN_VOYAGERtoAFNI SUMA/3dSurfMask \
SUMA/SurfToSurf SUMA/Surf2VolCoord SUMA/ROIgrow SUMA/SurfDsetInfo \
SUMA/SurfInfo SUMA/AnalyzeTrace SUMA/DriveSuma SUMA/SurfDist \
macosx_10.5_Intel ; \
if [ -f SUMA/SurfMesh ]; then /bin/cp -f SUMA/SurfMesh macosx_10.5_Intel ; fi; \
/bin/cp -f @SUMA_* macosx_10.5_Intel ;)
cp: SUMA/suma: No such file or directory
cp: SUMA/DriveSuma: No such file or directory
cp: SUMA/AnalyzeTrace: No such file or directory
cp: SUMA/SurfInfo: No such file or directory
cp: SUMA/SurfDsetInfo: No such file or directory
cp: SUMA/ROIgrow: No such file or directory
cp: SUMA/Surf2VolCoord: No such file or directory
cp: SUMA/SurfToSurf: No such file or directory
cp: SUMA/3dSurfMask: No such file or directory
cp: SUMA/3dBRAIN_VOYAGERtoAFNI: No such file or directory
cp: SUMA/3dCRUISEtoAFNI: No such file or directory
cp: SUMA/3dSkullStrip: No such file or directory
cp: SUMA/SampBias: No such file or directory
cp: SUMA/SUMA_paperplane: No such file or directory
cp: SUMA/SurfSmooth: No such file or directory
cp: SUMA/SurfQual: No such file or directory
cp: SUMA/SurfPatch: No such file or directory
cp: SUMA/FSread_annot: No such file or directory
cp: SUMA/quickspec: No such file or directory
cp: SUMA/inspec: No such file or directory
cp: SUMA/SurfaceMetrics: No such file or directory
cp: SUMA/SUMA_pixmap2eps: No such file or directory
cp: SUMA/SUMA_glxdino: No such file or directory
cp: SUMA/ConvexHull: No such file or directory
cp: SUMA/IsoSurface: No such file or directory
cp: SUMA/SurfClust: No such file or directory
cp: SUMA/ConvertDset: No such file or directory
cp: SUMA/ConvertSurface: No such file or directory
cp: SUMA/CompareSurfaces: No such file or directory
cp: SUMA/CreateIcosahedron: No such file or directory
cp: SUMA/MapIcosahedron: No such file or directory
cp: SUMA/ScaleToMap: No such file or directory
cp: SUMA/SurfMeasures: No such file or directory
cp: SUMA/3dSurf2Vol: No such file or directory
cp: SUMA/3dVol2Surf: No such file or directory
cp: SUMA/ROI2dataset: No such file or directory
cp: SUMA/MakeColorMap: No such file or directory
cp: SUMA/SurfDist: No such file or directory
/bin/mv -f afni to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge count sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnvals fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim 3daxialize p2t cdf 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta waver 3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket 3dNLfim 3dTSgen AlphaSim 3dFWHM plugout_tt 3dnoise plugout_ijk 3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna 2dImReg 3dmaskave 3dbuc2fim byteorder imstack 3dDeconvolve 3dTcat 3drotate 3dvolreg 3dpc 3dfractionize 1dplot adwarp imupsam 3dIntracranial 24swap 3dTsmooth RSFgen float_scan 1dtranspose 3dFourier 3dNotes 3dROIstats 1deval 3dStatClust 3dTstat 3dmaskdump 3dTshift 3dDetrend 1dfft 1dcat 3drename 1dnorm afni_vcheck 3ddot 3dWavelets 3dfim+ imcutup imcat 3dWinsor 3dZeropad 3dTagalign 3dUndump 3dMean 3dAttribute cat_matvec 3dOverlap 3dClipLevel 3dZregrid 3dEntropy 3ddelay ent16 3dRowFillin 1dgrayplot 3dToutcount 1dsum 3dExtrema qhull strblast 3dConvolve 3dZcutup 3dZcat 3dTqual 3dGetrow 3dTcorrelate 3dAnatNudge 3dcopy Vecwarp 3dMINCtoAFNI 3dCM 3dAFNItoANALYZE siemens_vision ge_header mayo_analyze 3dAFNItoNIFTI 3dAutoTcorrelate 3dFDR rtfeedme 3dAutomask 3dAFNItoMINC 3dBrickStat 3dThreetoRGB Ifile 3dresample 3dAutobox 3dLRflip 3dANALYZEtoAFNI dicom_hdr 3dDespike dicom_to_raw file_tool rotcom 1ddot 1dsvd 3dDeconvolve_f 3dAnhist 3dAFNIto3D 3dUniformize 3dWarp nicat 3dSpatNorm Imon fftest serial_helper 3dDTeig 3dDWItoDT 3dWarpDrive nifti_tool 3dAllineate nifti1_test whereami plugout_drive 3dMedianFilter 3dretroicor 3dAFNItoNIML 3dAFNItoRaw im2niml 3dedge3 DTIStudioFibertoSegments Dimon 3dLocalstat 3danisosmooth 3dmaxima 3dTwotoComplex 3dInvFMRI 3dmatcalc 3dAcost 3dLocalBistat 3dFWHMx 3dBlurToFWHM 1dSEM 3dDFT 3dSynthesize 1dMarry 3dEmpty 3dsvm 1dFlagMotion 3dTsort 1dTsort 3dTfitter afni_history 1dUpsample 3dUpsample cjpeg djpeg whirlgif mpeg_encode myget Xphace rmz aiv macosx_10.5_Intel
/bin/cp -f @4Daverage @CommandGlobb @GetAfniOrient @DTI_studio_reposition @GetAfniPrefix @NoExt @UpdateAfni @RenamePanga @2dwarper @GetAfniView @SUMA_AlignToExperiment @SUMA_Make_Spec_FS @Purify_1D @SUMA_Make_Spec_SF @make_stim_file @Align_Centers suma_change_spec @CheckForAfniDset @clip_volume @AfniOrient2RAImap @parse_afni_name @auto_align @auto_tlrc @FromRAI @ToRAI @AfniOrientSign @VolCenter @Center_Distance @fix_FSsphere @parse_name @align_partial_oblique @np 3dMax @IsoMasks @SUMA_Make_Spec_Caret @FindAfniDsetPath @GetAfniID @float_fix @escape- 3dPAR2AFNI.pl @DriveAfni @DriveSuma @AddEdge @SurfSmooth.HEAT_07.examples @SUMA_FSvolToBRIK @isOblique afni_run_R @GetAfniDims @GetAfniRes @NoisySkullStrip @statauxcode macosx_10.5_Intel
/bin/cp -f python_scripts/*.py R_scripts/*.R macosx_10.5_Intel
if [ -f README.environment ]; then /bin/cp -f README.* macosx_10.5_Intel; fi;
if [ -f AFNI.afnirc ]; then /bin/cp -f AFNI.afnirc macosx_10.5_Intel; fi;
if [ -f AFNI.sumarc ]; then /bin/cp -f AFNI.sumarc macosx_10.5_Intel; fi;
/bin/mv -f *.so macosx_10.5_Intel
/bin/cp -f faces/face_*.jpg faces/splash_*.jpg poems/poem_*.txt macosx_10.5_Intel
echo Plugins put in directory macosx_10.5_Intel:
Plugins put in directory macosx_10.5_Intel:
echo Do not forget to setenv AFNI_PLUGINPATH appropriately
Do not forget to setenv AFNI_PLUGINPATH appropriately
/bin/cp -f libmri.a libmrix.a libf2c.a libcoxplot.a libvolpack.a mrilib.h mcw_glob.h 3ddata.h thd_maker.h thd_iochan.h editvol.h cs.h eispack.h killer.h vecmat.h machdep.h tagset.h thd_compress.h afni_warp.h coxplot.h f2c.h volpack.h mcw_malloc.h multivector.h afni_environ.h niml.h cs_sort_template.h vol2surf.h macosx_10.5_Intel
/bin/rm -f `find . -name \*.o -print`
