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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
|
Jan Kalkus
August 12, 2008 03:48PM
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|
Hi,
I'm trying to run 3dDeconvolve on 28 different runs of a single subject. I have tried using both 32-bit and 64-bit versions of 3dDeconvolve, but still get stuck.
This is the command I'm using for the 32-bit 3dDeconvolve
3dDeconvolve \
-input /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset'[6..$]' \
-censor censor.1D \
-polort 2 \
-TR_1D 2.4 \
-num_stimts 11 \
#-local_times \
-stim_file 1 Faces.1D \
-stim_label 1 Faces \
-stim_file 2 Indoor.1D \
-stim_label 2 Indoor \
-stim_file 3 Food.1D \
-stim_label 3 Food \
-stim_file 4 Body.1D \
-stim_label 4 Body \
-stim_file 5 Object.1D \
-stim_label 5 Object \
-stim_file 6 'mc_params.1D[1]' \
-stim_label 6 mc_params1 \
-stim_base 6 \
-stim_file 7 'mc_params.1D[2]' \
-stim_label 7 mc_params2 \
-stim_base 7 \
-stim_file 8 'mc_params.1D[3]' \
-stim_label 8 mc_params3 \
-stim_base 8 \
-stim_file 9 'mc_params.1D[4]' \
-stim_label 9 mc_params4 \
-stim_base 9 \
-stim_file 10 'mc_params.1D[5]' \
-stim_label 10 mc_params5 \
-stim_base 10 \
-stim_file 11 'mc_params.1D[6]' \
-stim_label 11 mc_params6 \
-stim_base 11 \
-nobout \
-num_glt 6 \
-glt 1 F_vs_O.1D \
-glt_label 1 F_vs_O \
-glt 1 I_vs_O.1D \
-glt_label 2 I_vs_O \
-glt 1 FD_vs_O.1D \
-glt_label 3 FD_vs_O \
-glt 1 BP_vs_O.1D \
-glt_label 4 BP_vs_O \
-glt 1 F_vs_I.1D \
-glt_label 5 F_vs_I \
-glt 1 BP_vs_I.1D \
-glt_label 6 BP_vs_I \
-fout \
-tout \
-bucket bs_rh_allruns_surf_bucket.1D.dset \
-cbucket bs_rh_allruns_surf_cbucket.1D.dset
I get this error:
++ 3dDeconvolve: AFNI version=AFNI_2008_07_18_1710 (Aug 5 2008) [32-bit]
++ Authored by: B. Douglas Ward, et al.
3dDeconvolve(25248) malloc: *** error for object 0x180fe00: incorrect checksum for freed object - object was probably modified after being freed, break at szone_error to debug
3dDeconvolve(25248) malloc: *** set a breakpoint in szone_error to debug
++ current memory malloc-ated = 171031 bytes (about 171 thousand)
++ loading dataset /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset[6..$]
++ Reading /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_suu?P<?J
++ current memory malloc-ated = 79696647 bytes (about 80 million)
++ Input polort=2; Longest run=100.0 s; Recommended minimum polort=1 ++ OK ++
Fatal Signal 11 (SIGSEGV) received
allocate_memory
initialize_program
3dDeconvolve main
Bottom of Debug Stack
** AFNI version = AFNI_2008_07_18_1710 Compile date = Aug 5 2008
** Program Abort **
*** MCW_malloc post-corruption! serial=855319 size=2092 source=edt_emptycopy.c line#38
<- EDIT_empty_copy <- THD_open_1D <- THD_open_dataset <- read_input_data <- initialize_program
[[ Called from source=debugtrace.h line#124 ]]
*** MCW_malloc pre-corruption! serial=855322 size=1496 source=edt_emptycopy.c line#81 <- EDIT_empty_copy <- THD_open_1D <- THD_open_dataset <- read_input_data <- initialize_program
[[ Called from source=debugtrace.h line#124 ]]
*** MCW_malloc post-corruption! serial=855322 size=1496 source=edt_emptycopy.c line#81
<- EDIT_empty_copy <- THD_open_1D <- THD_open_dataset <- read_input_data <- initialize_program
[[ Called from source=debugtrace.h line#124 ]]
This is the command for the 63-bit version:
3dDeconvolve \
-input1D /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset'[6..$]' \
-censor censor.1D \
-polort 2 \
-TR_1D 2.4 \
-num_stimts 11 \
#-local_times \
-stim_file 1 Faces.1D \
-stim_label 1 Faces \
-stim_file 2 Indoor.1D \
-stim_label 2 Indoor \
-stim_file 3 Food.1D \
-stim_label 3 Food \
-stim_file 4 Body.1D \
-stim_label 4 Body \
-stim_file 5 Object.1D \
-stim_label 5 Object \
-stim_file 6 'mc_params.1D[1]' \
-stim_label 6 mc_params1 \
-stim_base 6 \
-stim_file 7 'mc_params.1D[2]' \
-stim_label 7 mc_params2 \
-stim_base 7 \
-stim_file 8 'mc_params.1D[3]' \
-stim_label 8 mc_params3 \
-stim_base 8 \
-stim_file 9 'mc_params.1D[4]' \
-stim_label 9 mc_params4 \
-stim_base 9 \
-stim_file 10 'mc_params.1D[5]' \
-stim_label 10 mc_params5 \
-stim_base 10 \
-stim_file 11 'mc_params.1D[6]' \
-stim_label 11 mc_params6 \
-stim_base 11 \
-nobout \
-num_glt 6 \
-glt 1 F_vs_O.1D \
-glt_label 1 F_vs_O \
-glt 1 I_vs_O.1D \
-glt_label 2 I_vs_O \
-glt 1 FD_vs_O.1D \
-glt_label 3 FD_vs_O \
-glt 1 BP_vs_O.1D \
-glt_label 4 BP_vs_O \
-glt 1 F_vs_I.1D \
-glt_label 5 F_vs_I \
-glt 1 BP_vs_I.1D \
-glt_label 6 BP_vs_I \
-fout \
-tout \
-bucket bs_rh_allruns_surf_bucket.1D.dset \
-cbucket bs_rh_allruns_surf_cbucket.1D.dset
And this is the error I get:
++ Program 3dDeconvolve: AFNI version=AFNI_2006_12_22_0933 [64-bit]
++ Authored by: B. Douglas Ward, et al.
** Can't read 1D dataset file /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset[6..$]
Can anyone help me out? Thank you.
- Jan Kalkus
I'm trying to run 3dDeconvolve on 28 different runs of a single subject. I have tried using both 32-bit and 64-bit versions of 3dDeconvolve, but still get stuck.
This is the command I'm using for the 32-bit 3dDeconvolve
3dDeconvolve \
-input /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset'[6..$]' \
-censor censor.1D \
-polort 2 \
-TR_1D 2.4 \
-num_stimts 11 \
#-local_times \
-stim_file 1 Faces.1D \
-stim_label 1 Faces \
-stim_file 2 Indoor.1D \
-stim_label 2 Indoor \
-stim_file 3 Food.1D \
-stim_label 3 Food \
-stim_file 4 Body.1D \
-stim_label 4 Body \
-stim_file 5 Object.1D \
-stim_label 5 Object \
-stim_file 6 'mc_params.1D[1]' \
-stim_label 6 mc_params1 \
-stim_base 6 \
-stim_file 7 'mc_params.1D[2]' \
-stim_label 7 mc_params2 \
-stim_base 7 \
-stim_file 8 'mc_params.1D[3]' \
-stim_label 8 mc_params3 \
-stim_base 8 \
-stim_file 9 'mc_params.1D[4]' \
-stim_label 9 mc_params4 \
-stim_base 9 \
-stim_file 10 'mc_params.1D[5]' \
-stim_label 10 mc_params5 \
-stim_base 10 \
-stim_file 11 'mc_params.1D[6]' \
-stim_label 11 mc_params6 \
-stim_base 11 \
-nobout \
-num_glt 6 \
-glt 1 F_vs_O.1D \
-glt_label 1 F_vs_O \
-glt 1 I_vs_O.1D \
-glt_label 2 I_vs_O \
-glt 1 FD_vs_O.1D \
-glt_label 3 FD_vs_O \
-glt 1 BP_vs_O.1D \
-glt_label 4 BP_vs_O \
-glt 1 F_vs_I.1D \
-glt_label 5 F_vs_I \
-glt 1 BP_vs_I.1D \
-glt_label 6 BP_vs_I \
-fout \
-tout \
-bucket bs_rh_allruns_surf_bucket.1D.dset \
-cbucket bs_rh_allruns_surf_cbucket.1D.dset
I get this error:
++ 3dDeconvolve: AFNI version=AFNI_2008_07_18_1710 (Aug 5 2008) [32-bit]
++ Authored by: B. Douglas Ward, et al.
3dDeconvolve(25248) malloc: *** error for object 0x180fe00: incorrect checksum for freed object - object was probably modified after being freed, break at szone_error to debug
3dDeconvolve(25248) malloc: *** set a breakpoint in szone_error to debug
++ current memory malloc-ated = 171031 bytes (about 171 thousand)
++ loading dataset /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset[6..$]
++ Reading /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_suu?P<?J
++ current memory malloc-ated = 79696647 bytes (about 80 million)
++ Input polort=2; Longest run=100.0 s; Recommended minimum polort=1 ++ OK ++
Fatal Signal 11 (SIGSEGV) received
allocate_memory
initialize_program
3dDeconvolve main
Bottom of Debug Stack
** AFNI version = AFNI_2008_07_18_1710 Compile date = Aug 5 2008
** Program Abort **
*** MCW_malloc post-corruption! serial=855319 size=2092 source=edt_emptycopy.c line#38
<- EDIT_empty_copy <- THD_open_1D <- THD_open_dataset <- read_input_data <- initialize_program
[[ Called from source=debugtrace.h line#124 ]]
*** MCW_malloc pre-corruption! serial=855322 size=1496 source=edt_emptycopy.c line#81 <- EDIT_empty_copy <- THD_open_1D <- THD_open_dataset <- read_input_data <- initialize_program
[[ Called from source=debugtrace.h line#124 ]]
*** MCW_malloc post-corruption! serial=855322 size=1496 source=edt_emptycopy.c line#81
<- EDIT_empty_copy <- THD_open_1D <- THD_open_dataset <- read_input_data <- initialize_program
[[ Called from source=debugtrace.h line#124 ]]
This is the command for the 63-bit version:
3dDeconvolve \
-input1D /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset'[6..$]' /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset'[6..$]' \
-censor censor.1D \
-polort 2 \
-TR_1D 2.4 \
-num_stimts 11 \
#-local_times \
-stim_file 1 Faces.1D \
-stim_label 1 Faces \
-stim_file 2 Indoor.1D \
-stim_label 2 Indoor \
-stim_file 3 Food.1D \
-stim_label 3 Food \
-stim_file 4 Body.1D \
-stim_label 4 Body \
-stim_file 5 Object.1D \
-stim_label 5 Object \
-stim_file 6 'mc_params.1D[1]' \
-stim_label 6 mc_params1 \
-stim_base 6 \
-stim_file 7 'mc_params.1D[2]' \
-stim_label 7 mc_params2 \
-stim_base 7 \
-stim_file 8 'mc_params.1D[3]' \
-stim_label 8 mc_params3 \
-stim_base 8 \
-stim_file 9 'mc_params.1D[4]' \
-stim_label 9 mc_params4 \
-stim_base 9 \
-stim_file 10 'mc_params.1D[5]' \
-stim_label 10 mc_params5 \
-stim_base 10 \
-stim_file 11 'mc_params.1D[6]' \
-stim_label 11 mc_params6 \
-stim_base 11 \
-nobout \
-num_glt 6 \
-glt 1 F_vs_O.1D \
-glt_label 1 F_vs_O \
-glt 1 I_vs_O.1D \
-glt_label 2 I_vs_O \
-glt 1 FD_vs_O.1D \
-glt_label 3 FD_vs_O \
-glt 1 BP_vs_O.1D \
-glt_label 4 BP_vs_O \
-glt 1 F_vs_I.1D \
-glt_label 5 F_vs_I \
-glt 1 BP_vs_I.1D \
-glt_label 6 BP_vs_I \
-fout \
-tout \
-bucket bs_rh_allruns_surf_bucket.1D.dset \
-cbucket bs_rh_allruns_surf_cbucket.1D.dset
And this is the error I get:
++ Program 3dDeconvolve: AFNI version=AFNI_2006_12_22_0933 [64-bit]
++ Authored by: B. Douglas Ward, et al.
** Can't read 1D dataset file /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r1_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r3_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r4_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r5_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r6_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r7_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_091904/1D_dset/bs_rh_r8_vr_091904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r3_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r4_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092104/1D_dset/bs_rh_r5_vr_092104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r2_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r4_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r5_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r6_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r7_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092304/1D_dset/bs_rh_r8_vr_092304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r2_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092704/1D_dset/bs_rh_r4_vr_092704_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_092904/1D_dset/bs_rh_r1_vr_092904_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r1_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r3_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r4_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r5_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100104/1D_dset/bs_rh_r6_vr_100104_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r3_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r4_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r5_vr_100304_norm_ssm2.1D.dset[6..$] /jukebox/kastner/jan/monkey_surface_data/Group_Analysis/Biggie/bs_100304/1D_dset/bs_rh_r8_vr_100304_norm_ssm2.1D.dset[6..$]
Can anyone help me out? Thank you.
- Jan Kalkus
| Subject | Author | Posted |
|---|---|---|
|
Jan Kalkus | August 12, 2008 03:48PM |
|
Brad Buchsbaum | August 12, 2008 04:11PM |
|
Brad Buchsbaum | August 12, 2008 04:16PM |
|
Jan Kalkus | August 12, 2008 04:32PM |
|
Stephanie McMains | August 12, 2008 06:15PM |
