Gang,
Thanks for the program. I'm very excited to try it out and see how it relates to other connectivity analyses I've run.
I run into the following error when executing:
Analysis type (0: quit; 1: individual; 2: group)? 1
Warning: unable to access index for repository [
cran.hostingzero.net]
Warning: unable to access index for repository [
cran.hostingzero.net]
Number of regions/nodes (e.g., 6)? 6
[1] "Header with one line of labels is allowed in one-column files, but NOT in multi-column files."
ROI time series data type (0: MULTIPLE one-column files; 1: ONE multi-column file)? 0
[1] "No. 1 file just read in: TX1006_caudate_ROI_seed_detrended_ts.1D"
[1] "No. 2 file just read in: TX1006_cerebellum_ROI_seed_detrended_ts.1D"
[1] "No. 3 file just read in: TX1006_ifgorb_ROI_seed_detrended_ts.1D"
[1] "No. 4 file just read in: TX1006_LR_amygdala_ROI_seed_detrended_ts.1D"
[1] "No. 5 file just read in: TX1006_preSMA_ROI_seed_detrended_ts.1D"
[1] "No. 6 file just read in: TX1006_thalamus_ROI_seed_detrended_ts.1D"
[1] "#++++++++++++++++++++++++++++++++++++++++++++"
[1] "If there are n consecutive chunks of data, enter n-1 here."
[1] "If all the time series are consecutive, enter 0 breaks."
Number of breaks in the time series? 0
[1] "#++++++++++++++++++++++++++++++++++++++++++++"
[1] "Prior detrending is NOT recommended due to potential complications. "
[1] "Trend can be modeled through specifying the order of a polynomial here, "
[1] "or can be included as part of covariates later on. If you plan to model the"
[1] "trend with your own regressors or don't need to model it, choose -1 here."
[1] "If trend has already been removed (not recommended), choose 0 here."
Order of polynomials for drifting effects (note: -1 means no trend removal!)? -1
[1] "#++++++++++++++++++++++++++++++++++++++++++++"
Any other covariates or confounding effects than drifting (0: no; 1: yes)? 0
[1] "#++++++++++++++++++++++++++++++++++++++++++++"
Plot out the original ROI time series (0: no; 1: yes)? 1
[1] "-----------------"
[1] "If normalization was NOT performed during pre-processing, you can scale the data now."
Scale the ROI time series (0: no; 1: yes)? 0
Error: could not find function "VARselect"
In addition: Warning messages:
1: In library(myLib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'network'
2: package 'network' is not available
3: In library(myLib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'network'
4: In library(myLib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'gsl'
5: package 'gsl' is not available
6: In library(myLib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'gsl'
7: In library(myLib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'vars'
8: package 'vars' is not available
9: In library(myLib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'vars'
Does this have to do with the choice of mirror site or am I missing something locally in terms of my R installation.
Currently what I have installed works fine for running 3dLME if that is any help.
Vinny
