AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 06, 2010 11:40AM
Hi Rick,

Thanks for the quick response. I've tried 'sudo fink install glib2-dev,' but still get the same error response, pasted below:

[quintino-manos-computer:~] quintino% sudo fink install glib2-dev
Password:
Information about 4536 packages read in 1 seconds.
The following package will be installed or updated:
glib2-dev
The following additional package will be installed:
glib2-shlibs
Do you want to continue? [Y/n] y
Reading buildlock packages...
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-i386/gnome/glib2-dev_2.20.5-2_darwin-i386.deb /sw/fink/dists/stable/main/binary-darwin-i386/gnome/glib2-shlibs_2.20.5-2_darwin-i386.deb
(Reading database ... 21866 files and directories currently installed.)
Preparing to replace glib2-dev 2.20.5-2 (using .../glib2-dev_2.20.5-2_darwin-i386.deb) ...
Unpacking replacement glib2-dev ...
Preparing to replace glib2-shlibs 2.6.6-1113 (using .../glib2-shlibs_2.20.5-2_darwin-i386.deb) ...
Unpacking replacement glib2-shlibs ...
/sw/bin/dpkg: error processing /sw/fink/dists/stable/main/binary-darwin-i386/gnome/glib2-shlibs_2.20.5-2_darwin-i386.deb (--install):
trying to overwrite `/sw/etc/glib-2.0/charset.alias', which is also in package glib2
/sw/bin/dpkg-deb: subprocess paste killed by signal (Broken pipe)
dpkg: dependency problems prevent configuration of glib2-dev:
glib2-dev depends on glib2-shlibs (= 2.20.5-2); however:
Version of glib2-shlibs on system is 2.6.6-1113.
/sw/bin/dpkg: error processing glib2-dev (--install):
dependency problems - leaving unconfigured
Errors were encountered while processing:
/sw/fink/dists/stable/main/binary-darwin-i386/gnome/glib2-shlibs_2.20.5-2_darwin-i386.deb
glib2-dev
### execution of /sw/bin/dpkg-lockwait failed, exit code 1
Failed: can't batch-install packages: /sw/fink/dists/stable/main/binary-darwin-i386/gnome/glib2-dev_2.20.5-2_darwin-i386.deb /sw/fink/dists/stable/main/binary-darwin-i386/gnome/glib2-shlibs_2.20.5-2_darwin-i386.deb


I'm getting this error in response to attempting to run a 3dVol2Surf script:

[quintino-manos-computer:Experiments/VWFA_manuscript/Session1_vs_Session2] quintino% sh 3dVol2Surf_b1.sh
1808
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Applications/afni/3dVol2Surf
Reason: image not found
3dVol2Surf_b1.sh: line 82: 296 Trace/BPT trap 3dVol2Surf -spec wf.${subj}_Spec_lh.spec -surf_A lh.smoothwm -surf_B lh.pial -sv wf.${subj}_Spec_SurfVol_Shifted+orig -grid_parent ${subj}.DECON.Naming_S1+orig -map_func max_abs -f_steps 10 -f_index nodes -oob_value 0.0 -out_1D wf.${subj}_Naming_S1_coef.1D
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Applications/afni/3dVol2Surf
Reason: image not found
3dVol2Surf_b1.sh: line 82: 298 Trace/BPT trap 3dVol2Surf -spec wf.${subj}_Spec_lh.spec -surf_A lh.smoothwm -surf_B lh.pial -sv wf.${subj}_Spec_SurfVol_Shifted+orig -grid_parent ${subj}.DECON.Naming_S2+orig -map_func max_abs -f_steps 10 -f_index nodes -oob_value 0.0 -out_1D wf.${subj}_Naming_S2_coef.1D


Thing is, I'm running 10.4.11 (Tiger) on my mac... is this a problem?

Kind regards,
Tino
Subject Author Posted

SUMA not loading - Update binaries?

Jennifer November 05, 2008 02:32PM

Re: SUMA not loading - Update binaries?

Daniel Glen November 05, 2008 04:41PM

Re: SUMA not loading - Update binaries?

Jennifer November 07, 2008 08:43AM

Re: SUMA not loading - Update binaries?

rick reynolds November 07, 2008 09:08AM

Re: SUMA not loading - Update binaries?

Jennifer November 10, 2008 08:40AM

Re: SUMA not loading - Update binaries?

Tino April 06, 2010 01:48AM

Re: SUMA not loading - Update binaries?

rick reynolds April 06, 2010 08:56AM

Re: SUMA not loading - Update binaries?

Tino April 06, 2010 11:40AM

Re: SUMA not loading - Update binaries?

rick reynolds April 06, 2010 12:01PM

Re: SUMA not loading - Update binaries?

Tino April 06, 2010 12:46PM

Re: SUMA not loading - Update binaries?

rick reynolds April 06, 2010 02:13PM

Re: SUMA not loading - Update binaries?

Tino April 06, 2010 07:09PM

Re: SUMA not loading - Update binaries?

rick reynolds April 06, 2010 09:15PM

Re: SUMA not loading - Update binaries?

Tino April 07, 2010 06:08PM

Re: SUMA not loading - Update binaries?

Tino April 06, 2010 11:25PM

Re: SUMA not loading - Update binaries?

rick reynolds April 07, 2010 10:27AM