afni.nimh.nih.gov

Hi,

Thank you so much for your help. I used the 3dAllineate command with -allcostX, but the result was as follows:
+ - Final cost= -0.402179 ; 256 funcs
++ total CPU time= 306.5 sec

I used -allcost option also, but the result didn't change. I have the following questions:
1. Is the Final cost the result of all cost functions? How do you interpreate it (I mean the larger, the better)?
2. How can I see the result of each cost function seperately?

Best,
Siamak