Hi experts,
I encountered a strange problem about to3d. After to3d, the 2D anatomy is NOT aligned with the functional images. When acquiring the functional data, we copied parameters from the 2D anatomical images (opening the EPI sequence, right click the 2D sequence, copy parameter, then select the first option. The machine is a Siemens 3T). So I am confused why this could happen. The scanner is a Siemens 3T. If anyone would like to help me to figure out if the two kinds of images are not originally aligned or something wrong with the to3d, I will send her/him the 2d anatomy and one frame of EPI. I tried to attach them but failed. Thanks!
Cheers,
Min
