AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 21, 2008 12:02PM
Hi Gang, thanks for your reply. Yes, I don't have groups, so 3dRegAna seems to be good for me. I have a question though, I have ran the script as Example 1 from the manual, and I seem to get always the same region of activation, no matter what dataset (before -em1z- or after -em2z- treatment) and no matter what behavioral scores I input. Below are examples of two scripts that yield very similar clusters although they are different PET datasets and different scores:

3dRegAna \
-rows 14 \
-cols 1 \
-xydata 19 ../503/em1z.nii.gz \
-xydata 18 ../505/em1z.nii.gz \
-xydata 16 ../506/em1z.nii.gz \
-xydata 12 ../510/em1z.nii.gz \
-xydata 13 ../512/em1z.nii.gz \
-xydata 17 ../513/em1z.nii.gz \
-xydata 22 ../515/em1z.nii.gz \
-xydata 5 ../516/em1z.nii.gz \
-xydata 7 ../519/em1z.nii.gz \
-xydata 20 ../521/em1z.nii.gz \
-xydata 21 ../522/em1z.nii.gz \
-xydata 15 ../524/em1z.nii.gz \
-xydata 12 ../525/em1z.nii.gz \
-xydata 19 ../528/em1z.nii.gz \
-diskspace \
-rmsmin 1.0 \
-fdisp 10 \
-model 1 : 0 \
-flof 0.01 \
-fcoef 0 em1z.constant \
-fcoef 1 em1z.linear

**OR**

3dRegAna \
-rows 14 \
-cols 1 \
-xydata 20 ../503/em2z.nii.gz \
-xydata 14 ../505/em2z.nii.gz \
-xydata 6 ../506/em2z.nii.gz \
-xydata 19 ../510/em2z.nii.gz \
-xydata 3 ../512/em2z.nii.gz \
-xydata 5 ../513/em2z.nii.gz \
-xydata 7 ../515/em2z.nii.gz \
-xydata 1 ../516/em2z.nii.gz \
-xydata 8 ../519/em2z.nii.gz \
-xydata 3 ../521/em2z.nii.gz \
-xydata 0 ../522/em2z.nii.gz \
-xydata 3 ../524/em2z.nii.gz \
-xydata 5 ../525/em2z.nii.gz \
-xydata 13 ../528/em2z.nii.gz \
-diskspace \
-rmsmin 1.0 \
-fdisp 10 \
-model 1 : 0 \
-flof 0.01 \
-fcoef 0 em2z.constant \
-fcoef 1 em2z.linear

I have ran this with other scores also and keep getting the same cluster. Do you have suggestions of what can be wrong? Thanks, Jazmin.

Subject Author Posted

correlation of PET data and covariate of interest

Jazmin Camchong November 20, 2008 05:37PM

Re: correlation of PET data and covariate of interest

Gang Chen November 20, 2008 06:30PM

Re: correlation of PET data and covariate of interest

Jazmin November 21, 2008 09:30AM

Re: correlation of PET data and covariate of interest

Gang Chen November 21, 2008 09:41AM

Re: correlation of PET data and covariate of interest

Jazmin November 21, 2008 12:02PM

Re: correlation of PET data and covariate of interest

Gang Chen November 21, 2008 01:22PM

Re: correlation of PET data and covariate of interest

Jazmin November 22, 2008 12:20AM