AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Giuseppe Pagnoni
January 08, 2009 11:59AM
Dear AFNI folks,

new lab, new PC, and here I am at it again... trying to compile AFNI on FreeBSD 7.1 Release (32 bit). I modified the Makefile for linux_xorg7, also looking at the Makefile.BSD (which appears quite dated though).

I think I went pretty far along the compiling process (BTW, I had to use \"gmake totality\" instead of \"make totality\", because FreeBSD standard make is not gmake), but it ultimately crashed with the message:

creating src/gtsconfig.h
make: don\'t know how to make w. Stop
make: don\'t know how to make w. Stop
/usr/bin/ranlib: \'src/.libs/libgts.a\': No such file
cp: src/.libs/libgts.a: No such file or directory
gmake[1]: *** [libgts.a] Error 1
gmake[1]: Leaving directory `/usr/home/giuseppe/Downloads/afni_src/SUMA\'
cp: SUMA/libgts.a: No such file or directory
cp: SUMA/libgts.a: No such file or directory
gmake: *** [libgts.a] Error 1

I attached the Makefile and the compile log. It seems that the problem is with gts. Just in case, I saw that there is also a port available in FreeBSD for gts, and I could install and use that as a potential workaround, but then again I wouldn\'t know how to tell the AFNI compile process to use the external gts rather then the AFNI-shipped one.

I also have a couple of more specific questions:

1) should fortran be installed prior to the compilation (I saw some warning about it missing in the log file)? If so, which version would be best?

2) Even though I installed netpbm (whose libs are in /usr/local/lib, while the binaries are in /usr/local/bin), in the log files there are some complaints about not finding it:

checking for pgm_init in -lnetpbm... no
configure: WARNING: libnetpbm not found. Some programs will not be available.

I guess it is probably looking for it under /usr/bin /usr/lib, but I couldn\'t find any mention of its path in the Makefile, so that I could change it to /usr/local/...

Any help would make my (currently frustrated) day

thanks!

g.
Subject Author Posted

trying to compile AFNI on FreeBSD

Giuseppe Pagnoni January 08, 2009 11:59AM

Re: trying to compile AFNI on FreeBSD

Ziad January 08, 2009 01:38PM

Re: trying to compile AFNI on FreeBSD

Giuseppe Pagnoni January 09, 2009 05:58AM

Re: trying to compile AFNI on FreeBSD

Ziad January 09, 2009 09:17AM

Re: trying to compile AFNI on FreeBSD

Giuseppe Pagnoni January 20, 2009 11:53AM

Re: trying to compile AFNI on FreeBSD

ziad January 22, 2009 01:14PM

Re: trying to compile AFNI on FreeBSD

Giuseppe Pagnoni January 23, 2009 03:12AM

Re: trying to compile AFNI on FreeBSD

ziad January 23, 2009 09:24AM

Re: trying to compile AFNI on FreeBSD

rick reynolds January 23, 2009 09:44AM

Re: trying to compile AFNI on FreeBSD

rick reynolds January 23, 2009 10:08AM

Re: trying to compile AFNI on FreeBSD

Giuseppe Pagnoni January 23, 2009 12:23PM

Re: trying to compile AFNI on FreeBSD

Judd January 08, 2009 10:59PM

Re: trying to compile AFNI on FreeBSD

Giuseppe Pagnoni January 09, 2009 05:47AM