AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 03, 2009 09:36AM
Mixing types within a dataset is the sort of thing that can
really confuse programs. I do not know of specific cases where
it would be a problem, but I expect that there are some.

Let me address your other questions before continuing.

- If there are too many sub-brick labels to dislpay on the
screen, then instead or left-clicking on the label to change
it, try right-clicking on the text to its left (e.g. 'Olay').
That should give you a scroll menu.

- The command-line tool to get information about the sub-bricks
is '3dinfo'. That matches the misc->Olay Info, say. You would
probably want to run it with the -verb option, to display more
than just the first few sub-bricks.

Regarding this, I highly suggest keeping the sub-bricks in the
same positions. Sub-brick 24 should always mean the same thing,
or your scripting life gets very difficult.

---

If your original 3dDeconvolve command was run with float, then
maybe you are better off re-running the first 5 (and everything
afterwards) with -float.

...which brings us to your subject question... :)

You can undo the 3dDeconvolve simply by removing the newly
added sub-bricks from last time. Be very careful to remove the
correct ones, but it should work.

For example, if you started with 20 sub-bricks and ended up with
26 after using -xrestore, then remove those last 6 with 3dbucket.
Start with renaming (moving) the original dataset, and then using
3dinfo to verify the sub-bricks.

3drename stats.all stats.26
3dinfo -verb stats.26+orig
3dbucket -prefix stats.all stats.26+orig

3dDeconvolve -xrestore ... -bucket stats.20

That should work.

- rick

Subject Author Posted

Undoing contrasts?

Aditya March 01, 2009 08:31PM

Re: Undoing contrasts?

rick reynolds March 02, 2009 04:13PM

Re: Undoing contrasts?

Aditya March 03, 2009 12:00AM

Re: Undoing contrasts?

rick reynolds March 03, 2009 09:36AM

Re: Undoing contrasts?

Aditya March 03, 2009 01:15PM

Re: Undoing contrasts?

rick reynolds March 03, 2009 03:34PM

Re: Undoing contrasts?

Aditya March 04, 2009 12:53AM

Re: Undoing contrasts?

rick reynolds March 04, 2009 09:14AM

Re: Undoing contrasts?

Aditya March 05, 2009 05:01PM

Re: Undoing contrasts?

Aditya March 03, 2009 12:10AM

Re: Undoing contrasts?

Aditya March 03, 2009 12:14AM