AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Ian Ballard
March 30, 2009 06:11PM
Either the to3d function or the AFNItoANALYZE function is re-orienting the brains. I am trying to take ROIs drawn in afni and import them to spm, but their orientation is different. When I take an spm ANALYZE file, transform it to a BRIK/HEAD file, and then transform it back, it is in a different orientation than it originally was. Do you know which function is doing this and how to fix it? If it was the to3d function, do you know how the brain was re-oriented? I already drew the ROIs, so if the to3d function is the one that re-orients, I will need to undo do this when I transform back to ANALYZE.
Thanks,
Ian
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Subject Author Posted

Help with afni to spm

Ian Ballard March 30, 2009 06:11PM

Re: Help with afni to spm

ziad March 30, 2009 09:33PM

Re: Help with afni to spm

Ian Ballard March 31, 2009 05:49PM

Re: Help with afni to spm

rick reynolds March 31, 2009 05:58PM

Re: Help with afni to spm

Ian Ballard April 01, 2009 02:59PM

Re: Help with afni to spm

rick reynolds April 01, 2009 07:50PM

Re: Help with afni to spm

Ian Ballard April 02, 2009 02:47PM

Re: Help with afni to spm

rick reynolds April 02, 2009 04:47PM

Re: Help with afni to spm

Ian Ballard April 03, 2009 05:59PM

Re: Help with afni to spm

rick reynolds April 06, 2009 12:59PM

Re: Help with afni to spm

Ian Ballard April 06, 2009 04:18PM

Re: Help with afni to spm

rick reynolds April 06, 2009 05:04PM