AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Ian Ballard
April 03, 2009 05:59PM
Thanks so much for your help, but I have one more problem. The original issue was transferring the images I had in afni back into an SPM compatible format (NIFTI or ANALYZE). The original images that I transformed to a BRIK file are in the format I.number (sorry, I do not know the name of this image format. This is raw data though, and there are about 100 of these files per subject). An example of the exact command I used is:
to3d -session 040624b -prefix 040624b -anat ../rawdata/040624b/I*

It was on this dataset that I drew the ROI. Is there any way to find out exactly how afni re-oriented these images, so that I can transfer them backwards and then transfer to SPM?

Thanks,
Ian
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Subject Author Posted

Help with afni to spm

Ian Ballard March 30, 2009 06:11PM

Re: Help with afni to spm

ziad March 30, 2009 09:33PM

Re: Help with afni to spm

Ian Ballard March 31, 2009 05:49PM

Re: Help with afni to spm

rick reynolds March 31, 2009 05:58PM

Re: Help with afni to spm

Ian Ballard April 01, 2009 02:59PM

Re: Help with afni to spm

rick reynolds April 01, 2009 07:50PM

Re: Help with afni to spm

Ian Ballard April 02, 2009 02:47PM

Re: Help with afni to spm

rick reynolds April 02, 2009 04:47PM

Re: Help with afni to spm

Ian Ballard April 03, 2009 05:59PM

Re: Help with afni to spm

rick reynolds April 06, 2009 12:59PM

Re: Help with afni to spm

Ian Ballard April 06, 2009 04:18PM

Re: Help with afni to spm

rick reynolds April 06, 2009 05:04PM