AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 10, 2009 11:20AM
Hi Marc,

Those 5 regressors are highly correlated. You can see it
visually when using just "1dplot -sepscl my.xmat.1D" (if
we suppose your X-matrix is called my.xmat.1D). You can
get the correlation values with 1d_tool.py, too:

1d_tool.py -infile my.xmat.1D -show_cormat_warnings


That requires the latest AFNI binaries, from last night.

----

In particuar, regressors 17 and 18 (your first 2 of interest)
are practially just negatives of each other.

On top of that, regressor 21 (the last one) is on practically
the entire time. These will certainly start to match the
baseline when they are put together.

----

It's a little difficult to ponder without knowing your design
in detail. But the curves look problematic, when taken
together.

Also, for a block design, I do not think it is good to have
multiple stimulations at the same time. If a brain location
has already plateaued/saturated due to one stimulus, I do not
expect much difference to be seen from another stimulus that
is supposed to have a response plateau at the same time.

- rick

P.S. You do not need to contact Bob separately. It is just
good to tell the person that you are communicating with, so
they know the data has been uploaded.

Subject Author Posted

WARNING: !! in Signal_Baseline matrix

Marc April 09, 2009 04:21PM

Re: WARNING: !! in Signal_Baseline matrix

rick reynolds April 09, 2009 05:56PM

Re: WARNING: !! in Signal_Baseline matrix

Marc April 09, 2009 06:19PM

Re: WARNING: !! in Signal_Baseline matrix

Marc April 09, 2009 06:20PM

Re: WARNING: !! in Signal_Baseline matrix

rick reynolds April 09, 2009 07:01PM

Re: WARNING: !! in Signal_Baseline matrix

Marc April 10, 2009 10:15AM

Re: WARNING: !! in Signal_Baseline matrix

rick reynolds April 10, 2009 11:20AM

Re: WARNING: !! in Signal_Baseline matrix

Marc April 10, 2009 12:25PM

Re: WARNING: !! in Signal_Baseline matrix

Bob Cox April 10, 2009 01:36PM

Re: WARNING: !! in Signal_Baseline matrix

Marc April 13, 2009 04:07PM