AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Colm Connolly
April 16, 2009 06:36AM
Hi all,

I downloaded and tried to use the latest linux_gcc33_64 tarball yesterday evening but am having problems with virtually every afni program I've tried so far. The problem seems to be related to environment processing.

When I have AFNI_SYSTEM_AFNIRC set to point to a file containing

***ENVIRONMENT
AFNI_VERSION_CHECK=NO
AFNI_NOSPLASH=YES
AFNI_NO_OBLIQUE_WARNING=YES
***END

I get segmentation faults.

When I unset the AFNI_SYSTEM_AFNIRC everything works. If I have the file contents listed above in ~/.afnirc I have no problems and everything appears to work as it should.

This problem did not occur with AFNI_2008_07_18_1710
[[Precompiled binary linux_gcc33_64: Feb 12 2009]]. Has something changed recently which could cause this problem?

A stack trace (with AFNI_SYSTEM_AFNIRC set from 3dAttribute DELTA js01.run1+orig.) looks like
#40491 0x0000000000478550 in my_getenv ()
#40492 0x00000000004785b0 in AFNI_yesenv ()
#40493 0x00000000004fafd4 in THD_filename_ok ()
#40494 0x00000000004fb199 in THD_filename_pure ()
#40495 0x0000000000478378 in AFNI_process_environ ()
#40496 0x0000000000478550 in my_getenv ()
#40497 0x00000000004785b0 in AFNI_yesenv ()
#40498 0x00000000004fafd4 in THD_filename_ok ()
#40499 0x00000000004fb199 in THD_filename_pure ()
#40500 0x0000000000478378 in AFNI_process_environ ()
#40501 0x0000000000478550 in my_getenv ()
#40502 0x00000000004785b0 in AFNI_yesenv ()
#40503 0x00000000004f6482 in THD_init_one_datablock ()
#40504 0x0000000000409d85 in THD_open_one_dataset ()
#40505 0x0000000000404baa in main ()

Bye,

Colm.

Subject Author Posted

bug in afni environment processing?

Colm Connolly April 16, 2009 06:36AM

Re: bug in afni environment processing? FIXED

Bob Cox April 16, 2009 11:24AM

Re: bug in afni environment processing? FIXED

Colm Connolly April 16, 2009 11:39AM