Hi all,
I downloaded and tried to use the latest linux_gcc33_64 tarball yesterday evening but am having problems with virtually every afni program I've tried so far. The problem seems to be related to environment processing.
When I have AFNI_SYSTEM_AFNIRC set to point to a file containing
***ENVIRONMENT
AFNI_VERSION_CHECK=NO
AFNI_NOSPLASH=YES
AFNI_NO_OBLIQUE_WARNING=YES
***END
I get segmentation faults.
When I unset the AFNI_SYSTEM_AFNIRC everything works. If I have the file contents listed above in ~/.afnirc I have no problems and everything appears to work as it should.
This problem did not occur with AFNI_2008_07_18_1710
[[Precompiled binary linux_gcc33_64: Feb 12 2009]]. Has something changed recently which could cause this problem?
A stack trace (with AFNI_SYSTEM_AFNIRC set from 3dAttribute DELTA js01.run1+orig.) looks like
#40491 0x0000000000478550 in my_getenv ()
#40492 0x00000000004785b0 in AFNI_yesenv ()
#40493 0x00000000004fafd4 in THD_filename_ok ()
#40494 0x00000000004fb199 in THD_filename_pure ()
#40495 0x0000000000478378 in AFNI_process_environ ()
#40496 0x0000000000478550 in my_getenv ()
#40497 0x00000000004785b0 in AFNI_yesenv ()
#40498 0x00000000004fafd4 in THD_filename_ok ()
#40499 0x00000000004fb199 in THD_filename_pure ()
#40500 0x0000000000478378 in AFNI_process_environ ()
#40501 0x0000000000478550 in my_getenv ()
#40502 0x00000000004785b0 in AFNI_yesenv ()
#40503 0x00000000004f6482 in THD_init_one_datablock ()
#40504 0x0000000000409d85 in THD_open_one_dataset ()
#40505 0x0000000000404baa in main ()
Bye,
Colm.
