AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 22, 2009 01:56PM
Hi Marnie,

That is not toooo huge a cluster size, assuming those are
1x1x1 mm voxels. Are they? I am used to seeing such a
number as a minimum volume in microliters, though maybe
for a more gentle threshold. Is your mask possibly at an
even higher resolution than cubic millimeters?

. . .

For comparison, I just ran that same command on a 1x1x1
dataset of a normal EPI mask and got a 0.05 correction
at 233 voxels.

Running it on an anatomical mask (so bigger than the EPI
mask, but still appropriate) shows a cluster of 367 voxels.

Using the entire dataset as a mask, I get 497 voxels. This
would be a mistake and the mask goes far outside the brain.

---

Based on those numbers I expect that you are either using a
dataset that is inappropriately high-resolution for EPI-based
results, possibly with voxels even smaller than 1x1x1.

So what are the dimensions and voxel sizes of your mask?
How many voxels are actually in the mask?

- rick

Subject Author Posted

AlphaSim - strange results

Marnie April 22, 2009 12:51PM

Re: AlphaSim - strange results

rick reynolds April 22, 2009 01:56PM

Re: AlphaSim - strange results

Marnie April 22, 2009 02:41PM

Re: AlphaSim - strange results

rick reynolds April 22, 2009 03:01PM

Re: AlphaSim - strange results

Marnie April 23, 2009 02:00PM

Re: AlphaSim - strange results

rick reynolds April 23, 2009 02:56PM

Re: AlphaSim - strange results

rick reynolds April 23, 2009 04:01PM

Re: AlphaSim - strange results

Marnie April 27, 2009 09:28AM

Re: AlphaSim - strange results

rick reynolds April 22, 2009 03:46PM