AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
April 27, 2009 11:07AM
This is from the help for 3dvolreg. If you use 1Dfile instead of dfile, you get just the 6 columns of motion parameters.

-dfile dname Save the motion parameters in file 'dname'.
The output is in 9 ASCII formatted columns:

n roll pitch yaw dS dL dP rmsold rmsnew

where: n = sub-brick index
roll = rotation about the I-S axis }
pitch = rotation about the R-L axis } degrees CCW
yaw = rotation about the A-P axis }
dS = displacement in the Superior direction }
dL = displacement in the Left direction } mm
dP = displacement in the Posterior direction }
rmsold = RMS difference between input brick and base brick
rmsnew = RMS difference between output brick and base brick
Subject Author Posted

Motion Correction AFNI vs. SPM

Andrew Jahn April 24, 2009 10:05AM

Re: Motion Correction AFNI vs. SPM

Daniel Glen April 24, 2009 11:06AM

Re: Motion Correction AFNI vs. SPM

rick reynolds April 24, 2009 11:30AM

Re: Motion Correction AFNI vs. SPM

bob cox April 25, 2009 05:40PM

Re: Motion Correction AFNI vs. SPM

Andrew Jahn April 27, 2009 09:43AM

Re: Motion Correction AFNI vs. SPM

Daniel Glen April 27, 2009 11:07AM