AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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son
May 13, 2009 11:00PM
hi gang

more question.

when group ICA, I was run as follows

1.# reduce the size of the time dimension using PCA
pca = ('3dpc -vmean -vnorm -reduce 20 SYHPCA_+f+ -prefix SYHPCA subject+tlrc')

2.# concatenate the reduced data from all subjects into a matrix
pcacat = ('3dTcat -session . -prefix SYHPCA_concat SYHPCA_20081127-1+tlrc SYHPCA_20081211+tlrc SYHPCA_20081218+tlrc ')

3.# reduce this matrix to N (the number of components to be estimated)
pca = ('3dpc -pcsave 10 -prefix SYHPCA_reduce_dimens SYHPCA_concat+tlrc')

question.
In Number1
when reduce Time dimension from individual subject.
what i choose the option -reduce or -pcsave?

In Number2
when concatenate the reduced data from all subjects

1 and 2, any type of concatenate data?

1. A subject [0.....50] + B subject[51...100]+c subject[101...150]=150(serial)

2. A subject[0.......50]
+
B subject[0.......50] =150(parallel)
+
C subject[0.......50]
Subject Author Posted

Group analysis.

son April 25, 2009 01:38AM

Re: Group analysis.

Gang Chen April 27, 2009 02:32PM

Re: Group analysis.

son April 29, 2009 12:05AM

Re: Group analysis.

son April 29, 2009 01:23AM

Re: Group analysis.

Bob Cox April 29, 2009 08:51AM

Re: Group analysis.

son April 30, 2009 09:02PM

Re: Group analysis.

Gang Chen May 01, 2009 04:55PM

Re: Group analysis.

son May 03, 2009 10:22PM

Re: Group analysis.

son May 13, 2009 11:00PM

Re: Group analysis.

Gang Chen May 14, 2009 06:01PM

Re: Group analysis.

son May 14, 2009 09:52PM

Re: Group analysis.

Gang Chen May 15, 2009 04:57PM

Re: Group analysis.

son May 17, 2009 02:42AM

Re: Group analysis.

son May 18, 2009 08:21PM