> There was an error in the script such that the SEED region files that were
> catenated then included in 3dDeconvolve as -stim_files had not been "wavered".
I'm not so sure about your original issue, but why did you need to convolve your seed time series since it's BOLD signal already?
> Is there a way of performing the context dependent connectivity analysis (as
> outlined in the script I provided in the earlier message) that would not involve
> the use of waver (i.e., the waver function would be performed during the 3dDecon step)
I don't see any reason/need to have the following lines (are they 0's and 1's in FeAware.txt?):
waver -dt 0.25 -GAM -gamb 8.6 -gamc 0.547 -gamd 0 -peak 1 -numout 1548 -input FeAware.txt'{0..1547}' > 1028r1.FeAware.1D
waver -dt 0.25 -GAM -gamb 8.6 -gamc 0.547 -gamd 0 -peak 1 -numout 1548 -input FeAware.txt'{1548..3095}' > 1028r2.FeAware.1D
waver -dt 0.25 -GAM -gamb 8.6 -gamc 0.547 -gamd 0 -peak 1 -numout 1548 -input FeAware.txt'{3096..4643}' > 1028r3.FeAware.1D
waver -dt 0.25 -GAM -gamb 8.6 -gamc 0.547 -gamd 0 -peak 1 -numout 1548 -input FeAware.txt'{4644..6191}' > 1028r4.FeAware.1D
waver -dt 0.25 -GAM -gamb 8.6 -gamc 0.547 -gamd 0 -peak 1 -numout 1548 -input FeAware.txt'{6192..7739}' > 1028r5.FeAware.1D
waver -dt 0.25 -GAM -gamb 8.6 -gamc 0.547 -gamd 0 -peak 1 -numout 1548 -input FeAware.txt'{7740..9287}' > 1028r6.FeAware.1D
Gang