Hi, a few days ago I finally started to try these handy new automatic functions (like auto_tlrc) you all have developed, but ran into a huge problem: anything that involved 3dSkullStrip produced a horrifically warped and cropped brain. After some testing I believe I've traced the problem to 3dSpatNorm (which I believe 3dSkullStrip uses). When I run 3dSpatNorm directly on my anatomical it produced the badly maimed brain I've attached. This happens on every single brain I've tried. I can use all the original AFNI programs just fine. Can anyone please tell me what's gone wrong? Thanks,
Chris
